Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979271 1979278 8–776 81 [0] [0] 81 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)77 (1.310) 60/266 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978362‑1978643
                                                                                                                                            |                                                                                                                                             
ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACTCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACACAACACTCAATTACTTAACATACATGta                                                                                                                                             >  1:730335‑M1/1‑141 (MQ=255)
     ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                        >  1:929802‑M1/1‑136 (MQ=255)
      tACACTTATTTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAACTACTTAACATAAATGtataagtc                                                                                                                                       <  2:840078‑M1/143‑9 (MQ=255)
           ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACGAAAAACACTCAATTACTTAACATAAAAGgataagtcaaact                                                                                                                                  >  2:477262‑M1/1‑130 (MQ=255)
           ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGgataagtcacact                                                                                                                                  >  2:857939‑M1/1‑130 (MQ=255)
             aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCTATTACTTAACATAAATGtataagtcatacttt                                                                                                                                >  2:738549‑M1/1‑128 (MQ=255)
             aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                >  1:860283‑M1/1‑128 (MQ=255)
              tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACCACGGAGGGGGCCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATCAATGtataagtcatactttt                                                                                                                               >  1:432356‑M1/1‑127 (MQ=255)
              tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                               <  1:232154‑M1/143‑17 (MQ=255)
                tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             >  1:378777‑M1/1‑125 (MQ=255)
                 aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                            >  2:1089737‑M1/1‑124 (MQ=255)
                  aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                           <  1:879510‑M1/143‑21 (MQ=255)
                   gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGATGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAACCACTCACTTCCTTCAGCTAACTGcaccagtcctacttttgtttt                                                                                                                          >  1:680153‑M1/1‑122 (MQ=255)
                    agttttccTAAATCGACGCAACTGTCCTCGTCACTACACGTACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACGCTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                         <  2:197315‑M1/141‑23 (MQ=255)
                     tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  2:711351‑M1/143‑24 (MQ=255)
                       ttgcgtaaatcGACGCAACTGTCCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGTTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                      <  2:543983‑M1/138‑26 (MQ=255)
                                 cGACGCCACTGTCCCCCTCTCTACAAGCACCTATAACGGAGGGGGGCTGCCATCTTCAATAATGCGTGATGCAGATCACACAATACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  2:124492‑M1/143‑36 (MQ=255)
                                 cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  1:228365‑M1/143‑36 (MQ=255)
                                   aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          >  1:651088‑M1/1‑106 (MQ=255)
                                           gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACATAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:152698‑M1/143‑46 (MQ=255)
                                           gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:604900‑M1/143‑46 (MQ=255)
                                               tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          >  2:656512‑M1/1‑94 (MQ=255)
                                               tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          <  1:656512‑M1/131‑38 (MQ=255)
                                               tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTAATGCAGATCACAAAGAACACTCAATTACTTAACATAAATGtataagtcatactcttgatttgagtgtatttcaatatgttaaaaagttt                                                                                              >  2:660033‑M1/1‑94 (MQ=255)
                                                   cgctaCACGCACATACAACGGAGGGGGGCTGCGATTTTCCACATTGCGTTATGCAGAACACACGAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                          <  1:972384‑M1/141‑54 (MQ=255)
                                                    aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                         <  1:282070‑M1/143‑55 (MQ=255)
                                                      tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaagtttttcgcta                                                                                       >  1:709442‑M1/1‑87 (MQ=255)
                                                          cGCACATACAACGGAGGGGGCCTGCAACGTTCAATTATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct                                                                                   <  1:844795‑M1/143‑61 (MQ=255)
                                                           gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaacaagtttttcgccacgctt                                                                                  >  1:470525‑M1/1‑82 (MQ=255)
                                                           gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  >  2:419241‑M1/1‑82 (MQ=255)
                                                           gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  <  1:774165‑M1/143‑62 (MQ=255)
                                                            cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaagtttttcgctacgctag                                                                                 >  2:686057‑M1/1‑81 (MQ=255)
                                                              caTACCACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAGAGAACACACACCCACATATCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:558166‑M1/143‑65 (MQ=255)
                                                              caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:30498‑M1/143‑65 (MQ=255)
                                                               aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACAGTCAATTACTTAACATAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcac                                                                              >  1:134641‑M1/1‑78 (MQ=255)
                                                                tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatcactaattttattgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                             >  1:1083188‑M1/1‑77 (MQ=255)
                                                                 aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatcagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcacaacactaaaaaac                                                                            >  1:418011‑M1/1‑76 (MQ=255)
                                                                   aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                          >  2:228013‑M1/1‑74 (MQ=255)
                                                                      ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                       <  1:903893‑M1/143‑73 (MQ=255)
                                                                          gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattttaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                   >  2:392119‑M1/1‑67 (MQ=255)
                                                                           ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttttcgctacgctcgcaagcaaaaatgaac                                                                  >  1:1007532‑M1/1‑66 (MQ=255)
                                                                              gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  >  2:802171‑M1/1‑63 (MQ=255)
                                                                              gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  <  1:802171‑M1/124‑62 (MQ=255)
                                                                                tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:903040‑M1/1‑61 (MQ=255)
                                                                                tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:997936‑M1/1‑61 (MQ=255)
                                                                                tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:995056‑M1/1‑61 (MQ=255)
                                                                                   gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                          >  2:1036204‑M1/1‑58 (MQ=255)
                                                                                   gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaacagcaata                                                          >  2:704363‑M1/1‑58 (MQ=255)
                                                                                     ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcagtctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaataggaataat                                                        >  1:990966‑M1/1‑56 (MQ=255)
                                                                                     ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagatctactagcaagcaaaaatgaaacaggaataac                                                        >  2:524628‑M1/1‑56 (MQ=255)
                                                                                         cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                    >  1:214691‑M1/1‑52 (MQ=255)
                                                                                             aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaacatgaaacaggaataatcgaaaggg                                                >  2:449597‑M1/1‑48 (MQ=255)
                                                                                                gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                             >  1:14811‑M1/1‑45 (MQ=255)
                                                                                                 cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                            >  2:309096‑M1/1‑44 (MQ=255)
                                                                                                         aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgcgatgttgcgcac                                    >  1:96861‑M1/1‑36 (MQ=255)
                                                                                                          gaccacacaaaaCACTCGACTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                   <  1:429176‑M1/140‑109 (MQ=255)
                                                                                                          gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaactgaaacaggaataatcgaaatggaatgctccgcacc                                   >  2:306399‑M1/1‑35 (MQ=255)
                                                                                                            tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                 <  1:309096‑M1/143‑111 (MQ=255)
                                                                                                              acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgagcagttgcgcacagtca                               >  2:878440‑M1/1‑31 (MQ=255)
                                                                                                               cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgcacagtcaa                              >  2:471535‑M1/1‑30 (MQ=255)
                                                                                                                acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                             >  1:818126‑M1/1‑29 (MQ=255)
                                                                                                                acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       >  2:700095‑M1/1‑29 (MQ=255)
                                                                                                                acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       <  1:700095‑M1/117‑89 (MQ=255)
                                                                                                                 caAATCACTCAATTATTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            <  2:551747‑M1/143‑116 (MQ=255)
                                                                                                                 caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            <  1:1036204‑M1/143‑116 (MQ=255)
                                                                                                                  aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                           >  1:808452‑M1/1‑27 (MQ=255)
                                                                                                                    aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                         <  1:1080379‑M1/143‑119 (MQ=255)
                                                                                                                       acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                      >  1:890527‑M1/1‑22 (MQ=255)
                                                                                                                         tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                    >  2:456879‑M1/1‑20 (MQ=255)
                                                                                                                           aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  >  1:649361‑M1/1‑18 (MQ=255)
                                                                                                                           aaTTACTTAACATAAATGtataagtcatacttttgatatgtgagtttttcaatctgttaaaaagtttttcgctacgctagcgagcaaaaaggaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  >  2:184429‑M1/1‑18 (MQ=255)
                                                                                                                             ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgta                >  1:768686‑M1/1‑16 (MQ=255)
                                                                                                                               aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggtataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa              <  1:228013‑M1/143‑130 (MQ=255)
                                                                                                                               aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa              <  2:531342‑M1/143‑130 (MQ=255)
                                                                                                                                 ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  2:640200‑M1/1‑12 (MQ=255)
                                                                                                                                 ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  1:731468‑M1/1‑12 (MQ=255)
                                                                                                                                  tAACATAAATGtataagtcatacttttgttttgggtgtatttccatctgttaaaaagtttttcgctacgctcccacgcaaaaatgaaagaggaataatcgcaatgggatgttgcacacagtcaacctaaatcaccgtaaatac           >  2:583596‑M1/1‑11 (MQ=255)
                                                                                                                                      aTAAATGtataagtcatacttttgttttgggtgtatctcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat       >  1:1059049‑M1/1‑7 (MQ=255)
                                                                                                                                         aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg    <  1:72591‑M1/143‑140 (MQ=255)
                                                                                                                                           tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  <  1:1020012‑M1/143‑142 (MQ=255)
                                                                                                                                           tGtataagtcatacttttgttttgggtgtatttcaaactgttaaaaagtttttcgctacgcgagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  <  2:474503‑M1/143‑142 (MQ=255)
                                                                                                                                            |                                                                                                                                             
GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978362‑1978643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: