Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	1978503–1979271	1979278	8–776	81 [0]	[0] 81	insB1–insA	insB1, insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1978502	0 (0.000)	77 (1.310)	60/266	0.0	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
	?	NC_000913	1979279 =	0 (0.000)					intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978362‑1978643                                                                                                                                             |                                                                                                                                              ggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACTCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACACAACACTCAATTACTTAACATACATGta                                                                                                                                             >  1:730335‑M1/1‑141 (MQ=255)      ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                        >  1:929802‑M1/1‑136 (MQ=255)       tACACTTATTTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTAAACTACTTAACATAAATGtataagtc                                                                                                                                       <  2:840078‑M1/143‑9 (MQ=255)            ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACGAAAAACACTCAATTACTTAACATAAAAGgataagtcaaact                                                                                                                                  >  2:477262‑M1/1‑130 (MQ=255)            ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGgataagtcacact                                                                                                                                  >  2:857939‑M1/1‑130 (MQ=255)              aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGTCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCTATTACTTAACATAAATGtataagtcatacttt                                                                                                                                >  2:738549‑M1/1‑128 (MQ=255)              aTCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                >  1:860283‑M1/1‑128 (MQ=255)               tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACCACGGAGGGGGCCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATCAATGtataagtcatactttt                                                                                                                               >  1:432356‑M1/1‑127 (MQ=255)               tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                               <  1:232154‑M1/143‑17 (MQ=255)                 tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                             >  1:378777‑M1/1‑125 (MQ=255)                  aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                            >  2:1089737‑M1/1‑124 (MQ=255)                   aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                           <  1:879510‑M1/143‑21 (MQ=255)                    gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGATGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAACCACTCACTTCCTTCAGCTAACTGcaccagtcctacttttgtttt                                                                                                                          >  1:680153‑M1/1‑122 (MQ=255)                     agttttccTAAATCGACGCAACTGTCCTCGTCACTACACGTACAGACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACGCTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                         <  2:197315‑M1/141‑23 (MQ=255)                      tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                        <  2:711351‑M1/143‑24 (MQ=255)                        ttgcgtaaatcGACGCAACTGTCCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGTTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                      <  2:543983‑M1/138‑26 (MQ=255)                                  cGACGCCACTGTCCCCCTCTCTACAAGCACCTATAACGGAGGGGGGCTGCCATCTTCAATAATGCGTGATGCAGATCACACAATACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  2:124492‑M1/143‑36 (MQ=255)                                  cGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat                                                                                                            <  1:228365‑M1/143‑36 (MQ=255)                                    aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          >  1:651088‑M1/1‑106 (MQ=255)                                            gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACATAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:152698‑M1/143‑46 (MQ=255)                                            gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                                                                  <  1:604900‑M1/143‑46 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCCATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          >  2:656512‑M1/1‑94 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                          <  1:656512‑M1/131‑38 (MQ=255)                                                tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTAATGCAGATCACAAAGAACACTCAATTACTTAACATAAATGtataagtcatactcttgatttgagtgtatttcaatatgttaaaaagttt                                                                                              >  2:660033‑M1/1‑94 (MQ=255)                                                    cgctaCACGCACATACAACGGAGGGGGGCTGCGATTTTCCACATTGCGTTATGCAGAACACACGAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                          <  1:972384‑M1/141‑54 (MQ=255)                                                     aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                         <  1:282070‑M1/143‑55 (MQ=255)                                                       tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaagtttttcgcta                                                                                       >  1:709442‑M1/1‑87 (MQ=255)                                                           cGCACATACAACGGAGGGGGCCTGCAACGTTCAATTATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct                                                                                   <  1:844795‑M1/143‑61 (MQ=255)                                                            gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaacaagtttttcgccacgctt                                                                                  >  1:470525‑M1/1‑82 (MQ=255)                                                            gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  >  2:419241‑M1/1‑82 (MQ=255)                                                            gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  <  1:774165‑M1/143‑62 (MQ=255)                                                             cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaagtttttcgctacgctag                                                                                 >  2:686057‑M1/1‑81 (MQ=255)                                                               caTACCACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACAGAGAACACACACCCACATATCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:558166‑M1/143‑65 (MQ=255)                                                               caTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                               <  1:30498‑M1/143‑65 (MQ=255)                                                                aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACAGTCAATTACTTAACATAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcac                                                                              >  1:134641‑M1/1‑78 (MQ=255)                                                                 tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatcactaattttattgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                             >  1:1083188‑M1/1‑77 (MQ=255)                                                                  aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatcagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcacaacactaaaaaac                                                                            >  1:418011‑M1/1‑76 (MQ=255)                                                                    aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                                                          >  2:228013‑M1/1‑74 (MQ=255)                                                                       ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                       <  1:903893‑M1/143‑73 (MQ=255)                                                                           gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattttaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                   >  2:392119‑M1/1‑67 (MQ=255)                                                                            ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaacagtttttcgctacgctcgcaagcaaaaatgaac                                                                  >  1:1007532‑M1/1‑66 (MQ=255)                                                                               gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  >  2:802171‑M1/1‑63 (MQ=255)                                                                               gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                  <  1:802171‑M1/124‑62 (MQ=255)                                                                                 tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:903040‑M1/1‑61 (MQ=255)                                                                                 tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:997936‑M1/1‑61 (MQ=255)                                                                                 tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                             >  1:995056‑M1/1‑61 (MQ=255)                                                                                    gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaata                                                          >  2:1036204‑M1/1‑58 (MQ=255)                                                                                    gATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaacagcaata                                                          >  2:704363‑M1/1‑58 (MQ=255)                                                                                      ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcagtctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaataggaataat                                                        >  1:990966‑M1/1‑56 (MQ=255)                                                                                      ttttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttagatctactagcaagcaaaaatgaaacaggaataac                                                        >  2:524628‑M1/1‑56 (MQ=255)                                                                                          cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                    >  1:214691‑M1/1‑52 (MQ=255)                                                                                              aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaacatgaaacaggaataatcgaaaggg                                                >  2:449597‑M1/1‑48 (MQ=255)                                                                                                 gCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggat                                             >  1:14811‑M1/1‑45 (MQ=255)                                                                                                  cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                            >  2:309096‑M1/1‑44 (MQ=255)                                                                                                          aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgcgatgttgcgcac                                    >  1:96861‑M1/1‑36 (MQ=255)                                                                                                           gaccacacaaaaCACTCGACTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                   <  1:429176‑M1/140‑109 (MQ=255)                                                                                                           gATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaactgaaacaggaataatcgaaatggaatgctccgcacc                                   >  2:306399‑M1/1‑35 (MQ=255)                                                                                                             tCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                                 <  1:309096‑M1/143‑111 (MQ=255)                                                                                                               acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgagcagttgcgcacagtca                               >  2:878440‑M1/1‑31 (MQ=255)                                                                                                                cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggctgttgcgcacagtcaa                              >  2:471535‑M1/1‑30 (MQ=255)                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                             >  1:818126‑M1/1‑29 (MQ=255)                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       >  2:700095‑M1/1‑29 (MQ=255)                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                       <  1:700095‑M1/117‑89 (MQ=255)                                                                                                                  caAATCACTCAATTATTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            <  2:551747‑M1/143‑116 (MQ=255)                                                                                                                  caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                            <  1:1036204‑M1/143‑116 (MQ=255)                                                                                                                   aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                           >  1:808452‑M1/1‑27 (MQ=255)                                                                                                                     aaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataa                         <  1:1080379‑M1/143‑119 (MQ=255)                                                                                                                        acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                      >  1:890527‑M1/1‑22 (MQ=255)                                                                                                                          tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                    >  2:456879‑M1/1‑20 (MQ=255)                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  >  1:649361‑M1/1‑18 (MQ=255)                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttttgatatgtgagtttttcaatctgttaaaaagtttttcgctacgctagcgagcaaaaaggaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                  >  2:184429‑M1/1‑18 (MQ=255)                                                                                                                              ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgta                >  1:768686‑M1/1‑16 (MQ=255)                                                                                                                                aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggtataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa              <  1:228013‑M1/143‑130 (MQ=255)                                                                                                                                aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaa              <  2:531342‑M1/143‑130 (MQ=255)                                                                                                                                  ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  2:640200‑M1/1‑12 (MQ=255)                                                                                                                                  ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaata            >  1:731468‑M1/1‑12 (MQ=255)                                                                                                                                   tAACATAAATGtataagtcatacttttgttttgggtgtatttccatctgttaaaaagtttttcgctacgctcccacgcaaaaatgaaagaggaataatcgcaatgggatgttgcacacagtcaacctaaatcaccgtaaatac           >  2:583596‑M1/1‑11 (MQ=255)                                                                                                                                       aTAAATGtataagtcatacttttgttttgggtgtatctcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat       >  1:1059049‑M1/1‑7 (MQ=255)                                                                                                                                          aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctg    <  1:72591‑M1/143‑140 (MQ=255)                                                                                                                                            tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  <  1:1020012‑M1/143‑142 (MQ=255)                                                                                                                                            tGtataagtcatacttttgttttgggtgtatttcaaactgttaaaaagtttttcgctacgcgagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgct  <  2:474503‑M1/143‑142 (MQ=255)                                                                                                                                             |                                                                                                                                              GGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCG  >  NC_000913/1978362‑1978643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑