| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3905649 | 103 (1.390) | 3 (0.050) | 3/252 | 10.4 | 3.1% | intergenic (‑53/+81) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon |
| ? | NC_000913 | = 3905671 | 98 (1.480) | intergenic (‑75/+59) | bglF/bglG | fused beta‑glucoside‑specific PTS enzymes: IIA component/IIB component/IIC component/transcriptional antiterminator of the bgl operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3905493‑3905649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacctgaaaaaaaTTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < NC_000913/3905671‑3905532 TCATCCTTTATTTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGCCTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAA < 2:787167/143‑1 CCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCGCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAC < 2:648775/143‑1 CTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGCCTCACAATGTTATCTGCGCCCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAAC < 2:603917/143‑1 CTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCCACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACGCCTTTTCTGCCAAACTCCACAAAAAACCC > 1:949404/1‑143 TTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTCCCGCTTTGCGGCATAACTCCAAAAAAAAACCTG > 2:1075491/1‑143 TTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAATTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAACCCTGAAAca > 1:632661/1‑141 TTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTCGCCCTCTACCGCTTTGCGGCCACACTCCAAAACAAACCCGCAAAAA > 1:694839/1‑143 ATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCCACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTTCGGCTAATCTCCAAAAAAATACCTGAAAAtatcgcctttt > 2:834694/1‑132 CTGCG‑CCCCCGCCTCCTGCGACTATTTTTCGGGCTAACTCCGTCATACCTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGG < 2:632661/143‑1 TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTT > 1:674605/1‑102 TCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTT < 2:674605/102‑1 AAACCTGAAAAAAATTGGTTGATGCGCGGCAGGCCGGTGTTTTCAGG‑TTTCTCTTAGGAGTTTTGCCGAAAAGCGGTAGAGGGCAAGTGATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATT < 1:269563/143‑1 AAACCTAAAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATT < 2:682937/143‑1 AACCTGAAAAGAATTGCTTGATCCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTG < 2:987941/143‑1 aaCTGAACAAGATGGCGTGGTTCTCGTCAGGCCGTTTGTTTCAGG‑CTTTTTGTTGGAGTTTAGCCGCAACGCGGTAGAGGGCCAGTTATGACGGAGTTAGCAAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 2:925152/141‑1 ACCTGAAAAAAATGGTGTGATACACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 2:33649/143‑1 ctTGAAAAAAATTGCTTGATGCACGTCGGGCGGGGTTGGGCAGGTTTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGGCGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGT < 2:1060058/141‑1 GAAAAAACTTGGCTGGCTCACGTCGGGCCGTGTTTTTGAGG‑TTTTTTTTTGGATTGTTGCCGCTAAGCCGTTGAGGTCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGT < 1:1047175/143‑1 AAAAAAATTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTC < 1:295029/143‑1 AAAAAAATTGCTTGATTCACGTCAGGCCGGTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTC < 2:1265504/143‑1 AAATTGCTAGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < 2:464285/143‑1 TCATCCTTTAATTTAAAACGTAATCGCGTTGCGCAATGCATCAGACTCACAATGTTATCTGCG‑CCCCCGACTCCTGCGACTATTTTTCTGGCTAACTCCGTCATAACTTGCCCTCTACCGCTTTGCGGCAAAACTCCAAAAAAAAACCTGAAAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3905493‑3905649‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacctgaaaaaaaTTGCTTGATTCACGTCAGGCCGTTTTTTTCAGG‑TTTTTTTTTGGAGTTTTGCCGCAAAGCGGTAGAGGGCAAGTTATGACGGAGTTAGCCAGAAAAATAGTCGCAGGAGTCGGGGGCGCAGATAACATTGTGAGTCTGAT < NC_000913/3905671‑3905532 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |