Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979270 1979278 9–776 97 [0] [0] 97 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)90 (1.290) 67/266 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642
                                                                                                                                         |                                                                                                                                            
cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                         <  2:329528‑M1/143‑6 (MQ=255)
   tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc                                                                                                                                      >  1:474772‑M1/1‑135 (MQ=255)
      acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaata                                                                                                                                   >  2:952448‑M1/1‑132 (MQ=255)
           tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCATTTACTTAACATAAAAGtataaatcatacttct                                                                                                                              >  1:522123‑M1/1‑127 (MQ=255)
            cTAAGATTTCTCCCAAACCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGAGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                             <  1:813219‑M1/143‑18 (MQ=255)
             tAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAAAGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcagacgtttgt                                                                                                                            >  1:444108‑M1/1‑125 (MQ=255)
              aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatgagtcgtacttttgtt                                                                                                                           >  2:151994‑M1/1‑124 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTACAGGCACATACAACGGAGGGTGGATGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  2:1081049‑M1/143‑24 (MQ=255)
                  tttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  2:526041‑M1/143‑24 (MQ=255)
                  tatgtcctaAATCGACGCAGCTGTACTCGTAACTACACGCACATACAACGGGGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                       <  1:1186662‑M1/139‑24 (MQ=255)
                   ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtgatacttttgttttggg                                                                                                                      >  2:1177612‑M1/1‑119 (MQ=255)
                    tttCCTAAAGCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtattattcatacttttgttttgggt                                                                                                                     <  1:159745‑M1/143‑26 (MQ=255)
                      tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCACTAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtgtaagtcatacttttgttttgggtgt                                                                                                                   >  2:191159‑M1/1‑116 (MQ=255)
                      tCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgagtgt                                                                                                                   >  2:1064375‑M1/1‑116 (MQ=255)
                        cTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttgctgtac                                                                                                                 >  1:951356‑M1/1‑114 (MQ=255)
                           aaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                                                              >  1:1041517‑M1/1‑111 (MQ=255)
                            aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtgctacttttgttttgggtgtatttca                                                                                                             >  2:1181020‑M1/1‑110 (MQ=255)
                                aggcaggtgtactcgTCACTATACGCACAGACAACTGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGAACACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatct                                                                                                         <  1:806876‑M1/136‑38 (MQ=255)
                                aCGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATGATTGtataagtcatacttttggtttgggtgtatttcaatct                                                                                                         <  2:298323‑M1/143‑38 (MQ=255)
                                  gtgactgTCCTCGTCACTTCACGCACATACAACGTACGGGTGCTGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATTtataattcatacttttgttttgggtgtatttcaatctgt                                                                                                       <  1:350582‑M1/140‑40 (MQ=255)
                                  gCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                       >  1:974794‑M1/1‑104 (MQ=255)
                                  gCAACTGTACTCGACACGACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                       <  2:636969‑M1/143‑40 (MQ=255)
                                   cAACTGTACTCGTGACTACACGCACATACGACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                                                                      <  1:869117‑M1/143‑41 (MQ=255)
                                    aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                     <  1:355972‑M1/143‑42 (MQ=255)
                                      cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                                                                   >  1:846498‑M1/1‑100 (MQ=255)
                                       tgtgCTCTTCTCTACACGCAGTTGCAGCGGATGTGTGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACTCTCATTTATTTAACATTAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa                                                                                                  <  1:334104‑M1/143‑45 (MQ=255)
                                         tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                                                                <  2:200289‑M1/143‑47 (MQ=255)
                                           cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                                                              >  2:653501‑M1/1‑95 (MQ=255)
                                            tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatcttttaaaaagttt                                                                                             >  2:662027‑M1/1‑94 (MQ=255)
                                            tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttctgttttgggtgtatttcaatctctcaacacgctt                                                                                             >  2:747791‑M1/1‑94 (MQ=255)
                                            tCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataaatcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  1:822288‑M1/1‑94 (MQ=255)
                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                            >  2:82594‑M1/1‑93 (MQ=255)
                                              gTCACTACACGTACATACTACGGAGGGGGGCTGCGATTTTCAATTGTGCATGATGCAGATCACACAAAACACTTAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                           <  2:1007837‑M1/143‑52 (MQ=255)
                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttatatagtttttc                                                                                          >  2:288530‑M1/1‑91 (MQ=255)
                                                cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                         <  1:531363‑M1/143‑54 (MQ=255)
                                                cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttaaatatggtaaaaagtttttcg                                                                                         >  1:48659‑M1/1‑90 (MQ=255)
                                                   tACACGCACATACAACGGAAGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAAAACTCACTTACTTCACATAAATGtataagtcatactttttatttgagcgtattttaatctgttataaaatttttaactc                                                                                      >  1:39643‑M1/1‑87 (MQ=255)
                                                    acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                                                                     >  2:335900‑M1/1‑86 (MQ=255)
                                                     cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacg                                                                                    <  2:1024339‑M1/143‑59 (MQ=255)
                                                      acGCACATACAACGGAGGGGGGCGGCGATTTGCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                   <  2:439450‑M1/143‑60 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 <  2:952432‑M1/143‑62 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta                                                                                 <  2:838136‑M1/143‑62 (MQ=255)
                                                        gCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagattatcactaagata                                                                                 >  2:634421‑M1/1‑82 (MQ=255)
                                                          acaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                                                               >  2:1240224‑M1/1‑80 (MQ=255)
                                                            aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaa                                                                             >  2:477991‑M1/1‑78 (MQ=255)
                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagc                                                                           >  2:84925‑M1/1‑76 (MQ=255)
                                                                aaCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtatttcgctacgctagcaagcaa                                                                         >  2:392622‑M1/1‑74 (MQ=255)
                                                                 aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgttacaaagtttttcgctacgctagcaagcaaa                                                                        >  2:648101‑M1/1‑73 (MQ=255)
                                                                   tgaGGGATGCTGCTATTTTCAATAAAGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                      <  2:37104‑M1/142‑73 (MQ=255)
                                                                       ggtgtcttcgattttcaATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                  <  2:10207‑M1/135‑77 (MQ=255)
                                                                         gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAATTGtataagtcatacttttgatttgggtgtatttcaatatgttaaaaagtttttcgctacgctagcaagcaaaaaagaaac                                                                >  1:626544‑M1/1‑65 (MQ=255)
                                                                         gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                >  2:764127‑M1/1‑65 (MQ=255)
                                                                         gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                                >  2:560773‑M1/1‑65 (MQ=255)
                                                                          ggCTGCGATTTTCAAGAACGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                               <  2:458798‑M1/143‑80 (MQ=255)
                                                                            cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAGATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                             >  1:638784‑M1/1‑62 (MQ=255)
                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                            >  1:1013425‑M1/1‑61 (MQ=255)
                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgccagcaagcaatcgcgaaaccgta                                                            >  1:603774‑M1/1‑61 (MQ=255)
                                                                                 aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATAACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                        >  2:154133‑M1/1‑57 (MQ=255)
                                                                                  ttttCAATAAGGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttggttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat                                                       <  1:1125067‑M1/143‑88 (MQ=255)
                                                                                     tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggcataatcga                                                    >  1:553960‑M1/1‑53 (MQ=255)
                                                                                       aataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaa                                                  <  2:814735‑M1/143‑93 (MQ=255)
                                                                                        ataatTAGTGATGCAGATCACACAAAAGAGTGGATTATTTAACATAATTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                 <  1:12298‑M1/143‑94 (MQ=255)
                                                                                        ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaat                                                 >  2:457425‑M1/1‑50 (MQ=255)
                                                                                        ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgatgtgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaagaggcatactcgcccc                                                 >  2:164336‑M1/1‑50 (MQ=255)
                                                                                            tGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                             >  1:936972‑M1/1‑46 (MQ=255)
                                                                                                 gATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttg                                        <  1:708419‑M1/143‑103 (MQ=255)
                                                                                                  aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  1:82594‑M1/143‑104 (MQ=255)
                                                                                                  aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  2:696599‑M1/143‑104 (MQ=255)
                                                                                                  aTGCAGATCACACAAAACACTCAATTACTTAACAGAAAGGtataagtcatacttttgttttgggtgtatttcaatctgtttaaaagcttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgc                                       <  2:540766‑M1/143‑104 (MQ=255)
                                                                                                          cacacaAAACACTCAATTACTTAACATAAATGtataagtcatgttaatgtcgtaagagaatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtc                               <  2:1224566‑M1/143‑112 (MQ=255)
                                                                                                           acacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtca                              <  2:974794‑M1/143‑113 (MQ=255)
                                                                                                             acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  2:689925‑M1/1‑29 (MQ=255)
                                                                                                             acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  2:691914‑M1/1‑29 (MQ=255)
                                                                                                             acaAAACACTCAATTACTTAACATAAATGtataagtcatactatagttttgggtgtatttcaatctgttaaaaagtttttcgctacgctaacaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                            >  1:747027‑M1/1‑29 (MQ=255)
                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaa                           >  2:831793‑M1/1‑28 (MQ=255)
                                                                                                               aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttggttgtatttcaatctgttaaaaagtttttcgctacgctagcaggcaaaaatgcaacaggaataattgaaaggggttgttgcgatcactgaaaat                          >  1:720987‑M1/1‑27 (MQ=255)
                                                                                                               aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaagat                          >  2:385551‑M1/1‑27 (MQ=255)
                                                                                                               aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaat                          >  2:1220503‑M1/1‑27 (MQ=255)
                                                                                                                  acacTCAATTACTTAACATAAATGtataagtcatgcttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaagaatgaaacaggaataatcgaaatgggatgttgcgcacagtaacaatgac                       >  2:842138‑M1/1‑24 (MQ=255)
                                                                                                                  acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtccaaataac                       >  2:261131‑M1/1‑24 (MQ=255)
                                                                                                                  acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgaacagtcaaaataac                       >  1:802867‑M1/1‑24 (MQ=255)
                                                                                                                    acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcgagcaaaaatgaaacaggaatactctaaatgggatgttgcgcacagtcaaaataactc                     >  2:774281‑M1/1‑22 (MQ=255)
                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactca                    <  2:1041517‑M1/143‑123 (MQ=255)
                                                                                                                      tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  2:989715‑M1/1‑20 (MQ=255)
                                                                                                                      tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                   >  2:148967‑M1/1‑20 (MQ=255)
                                                                                                                        aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg                 >  2:127879‑M1/1‑18 (MQ=255)
                                                                                                                        aaTTACTTAACATAAATGtataagtcatacttttgttttgggtatatttaaatctgttaaaaagtttctcggtacgctagcaagcaaaaatgaaacagtaataatcgaaatggcatgtttgtcaaagtcaacataacgtaacg                 >  1:1220708‑M1/1‑18 (MQ=255)
                                                                                                                             cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat            >  2:1125411‑M1/1‑13 (MQ=255)
                                                                                                                             cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat            >  2:307279‑M1/1‑13 (MQ=255)
                                                                                                                               tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataa          <  2:921174‑M1/143‑133 (MQ=255)
                                                                                                                                  cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatca       >  2:157387‑M1/1‑8 (MQ=255)
                                                                                                                                  cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataataa       >  2:317407‑M1/1‑8 (MQ=255)
                                                                                                                                   aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcat      >  1:195683‑M1/1‑7 (MQ=255)
                                                                                                                                    tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc     <  1:1206535‑M1/143‑138 (MQ=255)
                                                                                                                                     aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             >  2:1101613‑M1/1‑5 (MQ=255)
                                                                                                                                     aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt                                                                                             <  1:1101613‑M1/54‑50 (MQ=255)
                                                                                                                                       aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgcaacaggaataatcgaaatgggatgttgcgcacagtcaaactaactcaccgtaaataatactgtgc  >  1:762202‑M1/1‑3 (MQ=255)
                                                                                                                                         |                                                                                                                                            
CTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCC  >  NC_000913/1978365‑1978642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: