New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1979486 =	2 (0.030)	89 (1.320)	56/284	0.1	97.8%	intergenic (‑271/‑267)	insA/uspC	IS1 repressor TnpA/universal stress protein
	?	NC_000913	2101749 =	NA (NA)					intergenic (‑5/+146)	wbbL/insH1	pseudogene, lipopolysaccharide biosynthesis protein/IS5 transposase and trans‑activator

TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTA  >  NC_000913/2101609‑2101884                                                                                                                                              |                                                                                                                                        ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggt                                                                                                                                       >  2:137526/1‑142 (MQ=255) ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTATCTCTAGGAATTTTTGTTTTATTaagga                                                                                                                                       >  2:137683/1‑143 (MQ=255) ttCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGCATCA‑GAATAGATACTTTCTTTAGGCATTTTTGTTTTATTaagga                                                                                                                                       >  2:411637/1‑143 (MQ=255)   cacaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag                                                                                                                                     <  1:337213/143‑1 (MQ=255)   cacaGGACATAAAGTAACCTTGATCGAAGCCAGTTACACGCACAAAAGCTGAAAAACGGACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag                                                                                                                                     <  1:729003/143‑1 (MQ=255)    acaGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTCGGAATTTTTGTTTTGTTacggacag                                                                                                                                    >  2:86975/1‑140 (MQ=255)     caGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGt                                                                                                                                   <  2:439968/143‑1 (MQ=255)      aGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACGAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTg                                                                                                                                  >  1:590953/1‑143 (MQ=255)      aGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATCaaggagagtg                                                                                                                                  >  2:70863/1‑138 (MQ=255)       gTACATAAAGTACCCTTGTCCTTAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGc                                                                                                                                 <  2:760438/143‑1 (MQ=255)         aCATAACGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTGTAGGAATTTTTGTTTTATTAAGGAAGGTGCGa                                                                                                                               <  2:85631/143‑1 (MQ=255)          cATAAGGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGaa                                                                                                                              <  1:406145/143‑1 (MQ=255)           aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAACACGTAAGAGCATAGATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTGTTGTTTTATTAAGGAAAGTGCGAAt                                                                                                                             >  1:675620/1‑143 (MQ=255)           aTAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAAt                                                                                                                             >  2:608900/1‑143 (MQ=255)              aaGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAGTCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGGAGGTCCGAATAAg                                                                                                                          >  1:47656/1‑143 (MQ=255)               aGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTCTCTTTAGGAATTTTTGTTATATTAAGGAAGGTGCGAATaaac                                                                                                                         >  1:940246/1‑141 (MQ=255)                gTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCg                                                                                                                        <  1:169730/143‑1 (MQ=255)                gTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCg                                                                                                                        <  1:844709/143‑1 (MQ=255)                 tAACCTTGATCAAGGCCAGTTACACGCACAAAATCTGAAAAACGTACCAGCATGAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCgg                                                                                                                       <  2:445657/143‑1 (MQ=255)                   aCCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTGTTATTAAGGAAGGTGCGAATAAGCgggg                                                                                                                     >  1:1090375/1‑143 (MQ=255)                     cTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGAGAATAATCGGGGat                                                                                                                   >  2:689497/1‑142 (MQ=255)                          tCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCGGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTGAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttct                                                                                                              >  1:378401/1‑143 (MQ=255)                           cGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAAttctt                                                                                                             <  1:608900/143‑1 (MQ=255)                             aaGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATtcttct                                                                                                           >  1:397097/1‑143 (MQ=255)                                ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGACATTCGTCTCgg                                                                                                        >  1:370323/1‑143 (MQ=255)                                ccATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCgg                                                                                                        <  1:581975/143‑1 (MQ=255)                                 cATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGc                                                                                                       >  1:1020790/1‑143 (MQ=255)                                  aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GCATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAACTTCTTCTCGGCt                                                                                                      >  2:368954/1‑143 (MQ=255)                                  aTTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCt                                                                                                      <  1:1068554/143‑1 (MQ=255)                                   tttACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTg                                                                                                     >  1:71098/1‑143 (MQ=255)                                        acGCACAACATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTCTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCa                                                                                                <  2:589010/143‑1 (MQ=255)                                          gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGTAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                              >  2:565986/1‑143 (MQ=255)                                          gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGt                                                                                              >  1:360131/1‑143 (MQ=255)                                          gCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACAGTAGCA‑GGATAGATACTTTCTTTAGGAATTTTTGTTTTATTACGGAAGGTGCGAATAAGCGGGGAAATTCTTCCAGGCTGCCTCAgg                                                                                              >  2:1147899/1‑142 (MQ=38)                                             caAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGccat                                                                                           >  2:448112/1‑143 (MQ=255)                                                     gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc                                                                                   >  1:325867/1‑143 (MQ=255)                                                       aaaaCGTACCAGCATAAATGATCCCGCCCACCCAACAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt                                                                                 <  1:315783/143‑1 (MQ=255)                                                          gtggaggaGCAGAAAGGATCCTGGGCACCAATCAACAGCCGT‑TCATGGAGATATACTGTCCTTAGGAAGTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt                                                                              <  1:1113476/136‑1 (MQ=17)                                                              aCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                          <  2:1147641/143‑1 (MQ=255)                                                              aCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt                                                                          >  1:11174/1‑143 (MQ=255)                                                                cAGCATACATGATCCGGCGCAACAATCAACAAGCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa                                                                        <  2:777759/143‑1 (MQ=255)                                                                  gCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc                                                                      >  1:888358/1‑143 (MQ=255)                                                                        aTGATCCTGCGCACCAAGCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATGAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttt                                                                <  1:6177/143‑1 (MQ=255)                                                                          gATCCTGAGCACCTATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt                                                              <  2:1102215/143‑1 (MQ=255)                                                                           gtCCTGCGCACCAATCAACACCCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt                                                             <  2:505914/142‑1 (MQ=255)                                                                            tCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc                                                            >  1:1042097/1‑143 (MQ=255)                                                                             ccTGCGCACCACTCACCACCCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGTGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                           <  2:687814/143‑1 (MQ=255)                                                                             ccTGCGCACCAATCAACACCCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                           <  1:145413/143‑1 (MQ=255)                                                                             ccTGCGCAACAAGCAACGACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtct                                                           <  1:18490/143‑1 (MQ=255)                                                                              cTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc                                                          <  1:1025396/143‑1 (MQ=255)                                                                               tGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCAATTTTTTCTcc                                                         <  1:570570/143‑1 (MQ=255)                                                                                      cAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAt                                                  <  1:876486/143‑1 (MQ=255)                                                                                         tCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTTTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGCGCCGATTTTTTCTCCTGttttagca                                               >  2:124106/1‑136 (MQ=21)                                                                                           aacagcCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                             <  1:814566/143‑1 (MQ=255)                                                                                           aacaacCGGATCA‑GAATAGATACTTTCTTTGGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGTAAATTGTTTTCGGCTGGCTCAGTTATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt                                             <  1:576076/143‑1 (MQ=18)                                                                                            acaacCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg                                            >  1:1021193/1‑143 (MQ=255)                                                                                             caacCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTGTTAATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa                                           <  1:1089942/143‑1 (MQ=255)                                                                                              aacCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCGTCACGGCTGGATCAGTAACTACTTTTCTTCATGTTTGAGCCGATTTTTTCTCCGTTAAATTCCtttca                                          >  2:1143912/1‑140 (MQ=21)                                                                                              aacCGGATCA‑GAATAGATACTTTCTTTACCAAATTTTATTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGaa                                          <  1:795641/143‑1 (MQ=17)                                                                                                  gTATCA‑TAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCTAATAAGCGGTGAAATTCTTCTCGGCCGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAg                                      <  1:351257/143‑1 (MQ=255)                                                                                                           aTAGATACTTTCTTTAGGAATTTTTGTGTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTa                              <  2:793932/143‑1 (MQ=255)                                                                                                             aggttcttgctttAGCACTTTTTGTTTTATTACGGTAGGAGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGa                            <  1:977106/138‑1 (MQ=14)                                                                                                                  ctttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGtt                       >  2:1160062/1‑143 (MQ=255)                                                                                                                   tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGttt                      <  1:324415/143‑1 (MQ=255)                                                                                                                    ttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTAAACCGATTACGTTCGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGCttc                     >  1:857956/1‑143 (MQ=17)                                                                                                                       tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                  <  2:687485/143‑1 (MQ=255)                                                                                                                       tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                  <  2:325867/143‑1 (MQ=255)                                                                                                                       tttAGGAATTTTTGTTTTATTAACGAAGGTGCGTATAAGCGGGGAAATTCTTCTCTGCTGACTCAGTCATTTCATGTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTttcttc                  <  2:1011197/143‑1 (MQ=14)                                                                                                                        ttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATTTTTGAGCCGATTTTTCCTCCCGTATTTTCCTTGTATCTTCCTTTTTAGTCTGTttcttcc                 >  2:1100905/1‑142 (MQ=14)                                                                                                                        tgaGGAATCTTTGTTTTATGAAGGAAGGTGCGAAGAAGCGGGGAAATTCTTCTCGGCTGACTCAGGCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTGGAATCAGCCTATTTAGACCGTTTCTTCg                 <  1:281045/141‑1 (MQ=14)                                                                                                                          aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTTAATCCGCCTATTTAGACCGCTTCTTCGcc               >  2:1165530/1‑143 (MQ=255)                                                                                                                          aGGAATTTTTGTTGTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTGCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGcc               <  1:86975/143‑1 (MQ=255)                                                                                                                           ggAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGCATCCGCCTATTTAGACCGTGTCTTCGccg              >  2:1106517/1‑142 (MQ=255)                                                                                                                            gAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCAt             >  2:314747/1‑143 (MQ=255)                                                                                                                                 tttGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg        <  2:1042097/143‑1 (MQ=38)                                                                                                                                 tttGTTTTATCAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAg        <  1:168404/143‑1 (MQ=25)                                                                                                                                 tttGTGTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACGCAGTCATTTCATTTCTTCATGGTTGAGCCGATTTTTTCTCCCGTGAATTCCTTGAATCAGCCTATTGAGACCGTTTCGTCGCCATTTacg        >  1:798380/1‑141 (MQ=11)                                                                                                                                   tgtgTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGCTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGc      <  2:1037627/143‑1 (MQ=18)                                                                                                                                       ttattaAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTa  >  1:956217/1‑143 (MQ=32)                                                                                                                                              |                                                                                                                                        TTCACAGTACATAAAGTAACCTTGATCGAAGCCATTTACACGCACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCA‑GAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTA  >  NC_000913/2101609‑2101884

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.