Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 78 [0] [0] 79 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)75 (1.180) 61/268 0.0 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/1978361‑1978640
                                                                                                                                             |                                                                                                                                          
gggTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                                                                                           >  1:996283‑M1/1‑142 (MQ=255)
  gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCCACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACGCTCAATTACTTAACATAAATGtat                                                                                                                                         >  2:424505‑M1/1‑140 (MQ=255)
  gTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                                                         >  2:8500‑M1/1‑140 (MQ=255)
    cTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa                                                                                                                                       <  1:74402‑M1/143‑6 (MQ=255)
     tttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag                                                                                                                                      >  1:876387‑M1/1‑137 (MQ=255)
      ttACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                                                                     >  2:332169‑M1/1‑136 (MQ=255)
       tACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtc                                                                                                                                    <  1:869988‑M1/143‑9 (MQ=255)
          acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                 >  2:668078‑M1/1‑132 (MQ=255)
          acTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGAGCTGCGATTTTCCATAATGCGTGATGCAGATCACACAAAAAACTCAATTACTTAACATAAATGtataaggcata                                                                                                                                 >  2:600072‑M1/1‑132 (MQ=255)
            ttATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                                                               >  1:325684‑M1/1‑130 (MQ=255)
               tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                            <  1:550659‑M1/143‑17 (MQ=255)
               tCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATAACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttt                                                                                                                            >  2:72495‑M1/1‑127 (MQ=255)
                  aaGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAAAGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTCACATAAATGtataaggcatacttttgtt                                                                                                                         >  2:622441‑M1/1‑124 (MQ=255)
                    gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATCAGTGGGCGCCGCGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                       <  1:856184‑M1/143‑22 (MQ=255)
                    gATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                       >  1:917611‑M1/1‑122 (MQ=255)
                      tttttCCTCAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                                                                     <  1:955223‑M1/143‑24 (MQ=255)
                       ttttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactttcgttctggt                                                                                                                    >  2:208277‑M1/1‑119 (MQ=255)
                         ttCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATCCAAAGGAGGGGGGCTGCGATTTTCAATAATGGGTGATGCAGATAAGACAATAATCTCGATTACTTAACATAAATGtataagtgatacattgggcttgggtg                                                                                                                  >  1:377967‑M1/1‑117 (MQ=255)
                              aaaTCGACGCAACTGTACTCGTCGCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                             <  2:294854‑M1/143‑32 (MQ=255)
                              aaaTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtattt                                                                                                             <  1:703090‑M1/143‑32 (MQ=255)
                                      gCAACTGTACTCTTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                                                                     <  2:455706‑M1/143‑40 (MQ=255)
                                        aaCTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                   >  2:1050649‑M1/1‑102 (MQ=255)
                                             tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttcaaaag                                                                                              >  1:516726‑M1/1‑97 (MQ=255)
                                                  gTCACTGCACGCTCCTGCAACGGAGGGGGGCTGCGATTTTCAATAATGCGGGATGCAGGTCACACAAAACACTCAATTACTTATCATAAATGcataagtcatacttttggtttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  2:768398‑M1/143‑52 (MQ=255)
                                                  gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  1:631749‑M1/143‑52 (MQ=255)
                                                  gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         <  2:71572‑M1/143‑52 (MQ=255)
                                                  gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                         >  1:752518‑M1/1‑92 (MQ=255)
                                                   tCACTACACGCACATACAACGGTGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACAGAAATGtataaggcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                                                        <  1:599141‑M1/143‑53 (MQ=255)
                                                    cACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcg                                                                                       >  1:449745‑M1/1‑90 (MQ=255)
                                                     aCTACACGGACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc                                                                                      <  2:163384‑M1/143‑55 (MQ=255)
                                                      cTACAAGCACATACAACGGAGGGGGGCTGCGATTTTCTATAATGCGTGATGCAGATCACACAAGACACTCAATTACTTAACTTAAATGtatgagccatcctttggtgtggggtgtatttcaatctggtaaacagcgtttcgct                                                                                     >  2:976026‑M1/1‑88 (MQ=255)
                                                       tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtaatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta                                                                                    >  1:201337‑M1/1‑87 (MQ=255)
                                                          acGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGCTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctcttaaaaagtttatctctgcgc                                                                                 >  2:786834‑M1/1‑84 (MQ=255)
                                                                aTACAACGGAGGGGGGCGGCGATTTTCAATAATGCGTGATGCAGATCACACAAGACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcgacgctcgcaa                                                                           >  2:1032965‑M1/1‑78 (MQ=255)
                                                                 tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcactctgttaaaaagtttttcgctacgctagccag                                                                          >  1:1039703‑M1/1‑77 (MQ=255)
                                                                 tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                                                          >  2:731005‑M1/1‑77 (MQ=255)
                                                                  aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctaagctagcaggc                                                                         >  1:154333‑M1/1‑76 (MQ=255)
                                                                     aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttttggtgtatttcaatctgttaaaaagtttttcgctacgccagcaagcaac                                                                      >  2:586987‑M1/1‑73 (MQ=255)
                                                                      cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactcttgttttgggtgtatttcaatctgttaaagagtttttcgctacgctgataagcaaaa                                                                     >  2:250327‑M1/1‑72 (MQ=255)
                                                                        gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTAGTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                                                                   <  2:16277‑M1/143‑74 (MQ=255)
                                                                        gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACGCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaaggttttcgctacgctagcaagcaaaaat                                                                   <  1:1131413‑M1/143‑74 (MQ=255)
                                                                          ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                 >  1:505292‑M1/1‑68 (MQ=255)
                                                                          gggggcttggtattttctataatGCTTTTTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtatatgtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatga                                                                 <  2:287930‑M1/132‑76 (MQ=255)
                                                                           gggggCTGCGATGTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                <  2:151499‑M1/143‑77 (MQ=255)
                                                                            ggggCTCCTATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                                                               <  2:957514‑M1/143‑78 (MQ=255)
                                                                             gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                              >  1:580884‑M1/1‑65 (MQ=255)
                                                                             gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                                                              >  1:845045‑M1/1‑65 (MQ=255)
                                                                             gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgccagcaagcaaaaatgaaac                                                              >  2:722256‑M1/1‑65 (MQ=255)
                                                                              ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                             <  1:1150067‑M1/143‑80 (MQ=255)
                                                                               tttgccactttgcatattgcttgacgcatatCACACAAATGCCTCAATTACTTAACATAAATGtataagtcatacttttggtttgggtgtatttcaatccgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                                                            <  2:448087‑M1/130‑81 (MQ=255)
                                                                                 tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcattctgttaaaaagtttgtcgttaggttggcaagaaaaaatgaaacagca                                                          >  2:923618‑M1/1‑61 (MQ=255)
                                                                                 tGCGATTTGCGATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                                                          <  2:1061341‑M1/143‑83 (MQ=255)
                                                                                     aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                      <  2:209541‑M1/143‑87 (MQ=255)
                                                                                       tttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc                                                    >  1:103593‑M1/1‑55 (MQ=255)
                                                                                          cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaa                                                 >  2:1055170‑M1/1‑52 (MQ=255)
                                                                                             taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                              >  2:799181‑M1/1‑49 (MQ=255)
                                                                                              aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgacatgg                                             >  1:486452‑M1/1‑48 (MQ=255)
                                                                                                tgtgtgaGGCAGATCACACAAAACACTCAAGTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcaatctgttaaaaagtttttggtgacgctagcaagcaaaaatgaaacaggaataatcgaaatggga                                           <  1:530009‑M1/140‑98 (MQ=255)
                                                                                                  cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                         >  1:87818‑M1/1‑44 (MQ=255)
                                                                                                  cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg                                         <  1:682177‑M1/143‑100 (MQ=255)
                                                                                                       tgaagatAACACAAAACACCCAATTACTTAACATAAATGtataactcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggcatgttgcg                                    >  1:548368‑M1/4‑39 (MQ=255)
                                                                                                          aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcac                                 >  2:96401‑M1/1‑36 (MQ=255)
                                                                                                             acacacgaAACACTCAGTTACTTAACCTCAATGtataaggcacacttttggtttgggtgtagttcaatctgtgaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagt                              <  1:1037181‑M1/142‑111 (MQ=255)
                                                                                                                 acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                          <  1:501174‑M1/143‑115 (MQ=255)
                                                                                                                    aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaata                       <  1:332169‑M1/143‑118 (MQ=255)
                                                                                                                       cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                    <  1:668078‑M1/143‑121 (MQ=255)
                                                                                                                          tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcgccgtaaaaataactctc                 >  1:661390‑M1/1‑20 (MQ=255)
                                                                                                                          tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcac                 >  1:324185‑M1/1‑20 (MQ=255)
                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccg               >  1:809196‑M1/1‑18 (MQ=255)
                                                                                                                            aaTTACTTAACATAAATGtataagtcatacttgtgttttgggtgtatttcattctgttaaaaagtttttcgctaagctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcagcg               >  2:616949‑M1/1‑18 (MQ=255)
                                                                                                                             aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgt              <  1:722256‑M1/143‑127 (MQ=255)
                                                                                                                               tACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaa            <  1:72495‑M1/143‑129 (MQ=255)
                                                                                                                                 cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaat          >  1:1142861‑M1/1‑13 (MQ=255)
                                                                                                                                    aaCATAAATGtaaaagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataagcgaaatgggatgttgcgcacagtcaagataacgcgccgtaccaaat       >  1:425196‑M1/1‑10 (MQ=255)
                                                                                                                                     aCATAAATGtataagtcatatttttgttttgggtgtacttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaacaggaatgatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatc      <  2:1143196‑M1/143‑135 (MQ=255)
                                                                                                                                       aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttacaaagttttttgctacgctagcaagcaaaaatgaaacaggtataatcgaaatgggatgttgcgcacagtcaaaataactgaccgtaaagcatcat    >  2:308661‑M1/1‑7 (MQ=255)
                                                                                                                                        tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatc   >  2:568152‑M1/1‑6 (MQ=255)
                                                                                                                                         aaaTGtataagtcatacgttttttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatct  <  2:1074437‑M1/143‑139 (MQ=255)
                                                                                                                                             |                                                                                                                                          
GGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATG  >  NC_000913/1978361‑1978640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: