| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,184,542 | C→A | P1100Q (CCG→CAG) | rpoB → | RNA polymerase, beta subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,184,542 | 0 | C | A | 97.2% | 207.9 / ‑6.6 | 72 | P1100Q (CCG→CAG) | rpoB | RNA polymerase, beta subunit |
| Reads supporting (aligned to +/- strand): ref base C (0/2); new base A (26/43); total (26/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
CTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCA > NC_000913/4184403‑4184676 | cTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCt < 1:804173/143‑1 (MQ=255) ggCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGAGCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTgg > 1:295134/1‑143 (MQ=255) gCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTggg > 1:773066/1‑143 (MQ=255) cGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGc < 2:1164900/143‑1 (MQ=255) cGGCTAAACGCCGAATCCAGCCTGGTGACACGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCTATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGc < 1:366939/143‑1 (MQ=255) ttAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTa > 1:289931/1‑143 (MQ=255) tAAACTCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATAGTACTGAACCAGCTGGGCGTAc > 2:784578/1‑143 (MQ=255) tAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTAc < 1:827668/143‑1 (MQ=255) aaaCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATGTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGACAACGG‑CACGCCGGTCGACCTCGTACTGAACCAGCTGCGCCTAcc > 2:27065/1‑143 (MQ=255) aCGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGt > 1:713046/1‑143 (MQ=255) aTCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTAt < 1:720752/143‑1 (MQ=255) tCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGAGATGCCTTACGATGAAAACGG‑GACGCCGGTAGACATCGTCCTGAACCAGCTGGGCGTGCCGTCTCGTATg > 2:936846/1‑143 (MQ=255) cAGCCCGGTGACAAGAGGGCAGTTCGGCACGGTAACCAGGGTGCAAGTTCTAAGATCAACCCGATCGAAGATATGCCTGACGATGAAAACGG‑TACGCCGGTAGACAGCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGaa < 1:23727/143‑1 (MQ=255) agctcggTGACAAGTTGGCACGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAAc < 2:631433/138‑1 (MQ=255) ccTGGTGACAAGATGGCAGGTCGTCACGGAAACAAGGGTGTACTTATCAACGCGGCCCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAt < 1:855602/143‑1 (MQ=255) cTGGTGACAAGATGGCAGGTCGTCACGGGAACAAGGGTGTAACTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATc < 1:54797/143‑1 (MQ=255) gTGACAAGAGGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATgctcatttgg < 2:784451/143‑10 (MQ=255) tGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTc > 2:159080/1‑143 (MQ=255) gACAAGATGGCAGGTCGTCACGGGAACAAGGGTGTAATCTCTACGTTCCACCCCATCGAAGATGCGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCa < 1:44359/143‑1 (MQ=255) aCAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCATCTGGGCGTACCGTCTCGTACGAACATCGGTCAg > 2:348511/1‑143 (MQ=255) aGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATc < 1:368610/143‑1 (MQ=255) tGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTc < 1:1099082/143‑1 (MQ=255) tGGCAGGTCGTCACGGTAACAAGGGGGTGATTTCGAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTc < 2:468149/143‑1 (MQ=255) cAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCATCCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaa < 1:804609/143‑1 (MQ=255) agggcgttgcGGTAACAGGTATGTAATTTCTAAGGTCAAGCCGATCGAAGATATGCCTAACGAT‑ACAGCGGCCACCGAGATAGACACCGAACTGAACAAGCTTGGCGTACCGTCTGGTATGAAGATCGGTCAGATCCTCGaaa < 2:759678/134‑1 (MQ=255) aGGTCGTCCGGGTAACCAGGGTGTAATTTCTAAGATCAACCCGATCGAAGGTATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa < 1:1128057/143‑1 (MQ=255) aGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACAGCGTTCAGATCCTCGaac > 1:484027/1‑142 (MQ=255) aGGGCGTCACCGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGaaa < 2:968233/143‑1 (MQ=255) cgtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCa < 1:1091086/143‑1 (MQ=255) cgtcACGGCACCAAGGGTGTAGTGTCTACGATCAACCGGATCGAATATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCa < 1:517362/143‑1 (MQ=255) gtcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGACACAGCTGGGCGTACCGTCTCGTATGCACATCGGTCAGCTCCCCGGAAcaccc > 2:665856/1‑139 (MQ=255) tcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGCTAAAGCATCAGTTTGACACGG‑TACGCAGTCACACATCGTACGGAACAACCGCGGAGAACCGACTAGTAGGAACATCAAACAGATCCTAGAAACCCaac > 2:141162/1‑141 (MQ=255) tcACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTAGGAACATCGGTCAGATCCTCGAAACCCAcc > 1:196508/1‑143 (MQ=255) tAACAGGGGTGTCATTTCTAAGATCAACCCGGTCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTa < 2:673124/143‑1 (MQ=255) aaCAAGGGTGTAAGTTCTAAGAGCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTAt < 2:361702/143‑1 (MQ=255) aaCAAGGGCGGAATTCCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGCACCAGCTGGGCGTACCGTGTCGTATGAAGATCGGTCAGATCCTCGAAACCCACCTGGGTAt < 1:839117/143‑1 (MQ=255) cAAGCGTGTCATTTCTAAGCTCAACCCGATCGAAGATATGCCTTACGACGAAAACGG‑TACGCCGGTAGACATCGTACTGCTCCCCCTGGGGGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATgg < 1:674930/143‑1 (MQ=255) aaGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGCACATCGGTCAGATCCGCGAAACCCACCCGGGCACGGc > 2:423306/1‑143 (MQ=255) gggTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTg > 2:1052655/1‑143 (MQ=255) ggTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGc < 1:702260/143‑1 (MQ=255) gtAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGaa > 2:1102644/1‑143 (MQ=255) aaTGTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTGCTGAACCGTCTGGGCGTCCCCACACGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAg < 2:834697/143‑1 (MQ=255) aTTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCACGAAACCCACCTGGGTATGGCTGCGAAAgg > 2:857060/1‑143 (MQ=255) tttCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTGTCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGt < 1:321476/143‑1 (MQ=255) cccGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCGACCTGGGTATGGCTGCGAAAGGGATCGGCGagcaga > 1:78261/1‑138 (MQ=255) ccGCTCGAAGATATGCCTTACGAGGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGAt < 1:507500/143‑1 (MQ=255) gtaTCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATc < 2:1023480/141‑1 (MQ=255) ctaTCGATGATATGCCCTACGATGATAAGGC‑TACGGCCGTAGACATCGGACTGAACCAGCTGGGCGTACCGTCTAGTATGCACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATc < 1:751526/141‑1 (MQ=255) cGATCGAAGACATGCCGTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATc < 2:318437/143‑1 (MQ=255) gATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGGATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCa < 2:773066/143‑1 (MQ=255) tCGAAGATAGCGCTTACGCTGAACCCGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGGACCGTCTCGTATGAACATCGGTCAGACCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAAc < 1:565559/143‑1 (MQ=255) aaGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACCTCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACAAGGGGACGGGATGGAAAGGTATCCGCGACAAGAGCAACGcc > 2:514929/1‑143 (MQ=255) aaGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGcc > 1:923791/1‑143 (MQ=255) tatGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGc < 1:401738/143‑1 (MQ=255) tatGCCTTACGAGGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGc < 1:256037/143‑1 (MQ=255) cTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGGCGGGGATCTGGGAGAAGATCAACGCCATGCTGaaa > 1:910598/1‑143 (MQ=255) aCGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTCTGGCTGCGAAAGGTAACGGCGACAAGATCAACGCCATGCTGAACcag > 2:542729/1‑143 (MQ=255) aCGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcag < 2:295134/143‑1 (MQ=255) ggagcaagaCGG‑TACGGCGGTAGACATCGGACTGCACCAGCTGGGCGTACCGTCTCGTATGAGCATCGGTCAGCGCCTCGAAACCGACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagc < 2:1115434/135‑1 (MQ=255) cGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGCCCCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGCGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagc < 1:990510/143‑1 (MQ=255) gATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagca < 1:1102644/143‑1 (MQ=255) gATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGGATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAAcagca > 1:875088/1‑143 (MQ=255) aaaCGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACAGTCTCGTATGAACATCGGTCAGATCCTCGAGACCGACCTGGGTATGGCTGCGAAAGGGGTCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCcag > 1:455853/1‑143 (MQ=255) aaCGG‑TACGCCACTAGACCTCGTACTGAACCATCTGGCCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaaga < 2:760432/143‑1 (MQ=255) ccGG‑TACGCCGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAGCGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaagaa < 2:645080/142‑1 (MQ=255) aCGG‑TATGCTGTTAGACTTCGTACTGATCCAGCTGGGCGTACCGTCTCGTATGAACATCTGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCaagaa < 2:1048340/143‑1 (MQ=255) cGGTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGaag < 1:286599/143‑2 (MQ=255) gTAGACATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACt < 1:421600/143‑1 (MQ=255) aCATCGTACTGATCCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTgcgc < 1:907682/143‑1 (MQ=255) aCATCGTACTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGGCAGATCCTCGAAACCCACCTGGGGGTGGCTGCGAAAGGTATCGGCGACAAGCTCAACGCCATGCGGAACAAGCAGCAAGAAGGAGCGAAACTgcgc > 1:381134/1‑143 (MQ=255) aTCGTACTGAACCAGCTGGGCGTACGGTCTCGTAGTAGCGGCGGGCAGATCCTCTAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGACACTGCGCGa > 1:551327/1‑143 (MQ=255) aCTGAACCAGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCa < 1:84693/143‑1 (MQ=255) | CTGGCGGTTAAACGCCGTATCCAGCCTGGTGACAAGATGGCAGGTCGTCACGGTAACAAGGGTGTAATTTCTAAGATCAACCCGATCGAAGATATGCCTTACGATGAAAACGG‑TACGCCGGTAGACATCGTACTGAACCCGCTGGGCGTACCGTCTCGTATGAACATCGGTCAGATCCTCGAAACCCACCTGGGTATGGCTGCGAAAGGTATCGGCGACAAGATCAACGCCATGCTGAAACAGCAGCAAGAAGTCGCGAAACTGCGCGAATTCA > NC_000913/4184403‑4184676 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |