| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 8 (0.190) | 30 (0.810) | 27/252 | 0.3 | 86.8% | coding (290/630 nt) | stfP | e14 prophage, uncharacterized protein |
| ? | NC_000913 | 1209619 = | 2 (0.050) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related | |||||
CAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1207936‑1207790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209619‑1209760 ctGAGGGAGAGGTTGTTGCGGCATTCCATCCCCACTGAATGATTGCTGATTGCTCAATACCACCAATCAGAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCAGTGAGTTTTGCTCCTTCTCCCAAA < 2:6127/141‑1 GCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTAAATACATCTAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAAC > 1:613230/1‑143 GCTTTTGCGGCATTCCACTCCCATTGAATGATTACTGATTGCTCAATATCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTAT < 2:38994/143‑1 TTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAAGCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTCAATGCAGGTATGCTCCTTCTCCCCGACCGACGTTgctca > 1:195136/1‑138 GCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTTAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAAT < 1:534489/143‑1 CTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCCCTACGGTCGAATCCGCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAA < 1:530264/143‑1 TGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCCTTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAA > 2:492731/1‑143 AATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATG > 2:461303/1‑143 tTGATTACTGATTGCGCAATACCACGAATCATAACCGATATAGCTATGAAACCTTTGCTTCCTAATGTATCCGTTGATTCATTAAATTTTACTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGG < 2:643775/142‑1 CTCAATACCACCAATCATAACCGGTATAGCTATGAAACCAGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCCGCGGATATGAAAATGAAGAAATC‑AGAACCAAATGGCAccgatcatgctg > 2:211271/1‑131 AATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTA > 1:708879/1‑143 CAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACGAACGTTTATGAAAATGAAGAAATC‑ACAAGCAACTGGCATCATTCCTGCTTATACCCGGGGG > 2:102806/1‑143 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAA > 2:675549/1‑143 TAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATAATTCCTGCTGTTACAAGGGGGATctca > 1:76334/1‑139 CGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAGTA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATG < 1:412167/143‑1 GTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATG‑GGAAATATACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCT > 1:529955/1‑143 TATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTT > 1:174649/1‑143 CTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACCAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGG > 1:632767/1‑143 ATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCT < 1:542567/143‑1 GAAACCGGTGCTTCCTAATGTCGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTCGCTAT < 2:604316/143‑1 AACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGT > 1:77364/1‑143 CCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTCTGTACGCGTATCAA > 1:275428/1‑143 CTAACGGAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAAC < 1:635092/143‑1 ATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAA < 1:688389/143‑1 cAGCAGTTGCTGCATTGAGTTTTGTTGCTTCGCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAAGGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGA < 2:449222/142‑1 AGCCGTTGCGGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGCAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGAC < 1:609834/143‑1 CGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGGATCAACAAATGACCAG > 1:665281/1‑143 TTGCTGCATTCAGTTTTGCTCCTTCTCCCAAACCAACGTTCATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCGTTCCTGCTTTTACCAGAGGGATTTAACATGCTGATTCCCTATGTACGATAATCACCAAATGAagtgac > 2:207104/1‑137 GCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACA > 1:175901/1‑143 TTGAGTTTTGCTCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATC > 1:679595/1‑143 TTGAGTTTTGATCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCCTCATTCCTGCATTTAACAGAGGGATTTAACATGCTTATTGGCTATGTCCGCGTATCAACAAACGACCACAACACAGTTC > 2:100842/1‑143 CCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTCTTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTAATa > 2:180404/1‑142 CCCAAACCAACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACACCGTCATGCGCTGA > 1:196967/1‑143 ACGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG < 2:174649/143‑1 CAGAGGCAGATGCTTTTGCGGCATTCCACCCCCACTGAATGATTACTGATTGCTCAATACCACCAATCATAACCGGTATAGCTATGAAACCGGTGCGTCCTAATGTAGCCGTTGCTGCATTGAGTTTTGCTCCTTCTCCCAAACCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1207936‑1207790‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATA‑ACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAG > NC_000913/1209619‑1209760 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |