Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,299,499 Δ1,199 bp intergenic (+254/‑485) ychE → / → oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1299499–1300697 1300697 1–1199 58 [0] [0] 59 ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 12994980 (0.000)56 (1.380) 53/276 0.0 100% intergenic (+253/‑1684) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein
?NC_000913 1300698 = 0 (0.000)intergenic (+1453/‑484) ychE/oppA UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein

CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299362‑1299638
                                                                                                                                        |                                                                                                                                            
cAGTTAGTTATATGGATTTCCCTAACGGCTTCTCCGCACCTTCATGTTATTTTCGCCACATCATAATCCTGGGCTCGCTGCAGGATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataata                                                                                                                                        <  2:229375‑M1/143‑7 (MQ=255)
 agttagttATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCATGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTACCTTTGGTAGAGGAAAGTGCTAAataataa                                                                                                                                       >  2:45462‑M1/1‑136 (MQ=255)
       ttaTAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTATAGGAAAGTGCTAAataataatcaatt                                                                                                                                 <  2:561796‑M1/143‑14 (MQ=255)
         ataAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTACataataatcaattgt                                                                                                                               >  2:405228‑M1/1‑128 (MQ=255)
          taAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAGGTGCTAAataataatcaattgtt                                                                                                                              >  1:419597‑M1/1‑127 (MQ=255)
             ggATTTCCTTAACTGCTTCTCCTCACCATCATGTTATCTTCGCCACATCATACTCCTGGCCTTGCTGAAGAATAATTGAAATGATATTATTAATCCCACTGCCTTTGGAATAAGAAAGCACTAAataatcatcaatttttagc                                                                                                                           >  2:595074‑M1/1‑124 (MQ=255)
               aTTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatt                                                                                                                         >  1:460289‑M1/1‑122 (MQ=255)
                tttCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaatta                                                                                                                        <  1:364700‑M1/143‑23 (MQ=255)
                     ttAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtg                                                                                                                   >  1:107920‑M1/1‑116 (MQ=255)
                     gtaACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGATAAatcataatcaattgttaaattattgtg                                                                                                                   <  2:637856‑M1/142‑28 (MQ=255)
                       aaCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAACCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgca                                                                                                                 <  1:298019‑M1/143‑30 (MQ=255)
                        aCTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCCCTGCCTTTGGTAGAGCAAAGTGCTAAataataatcaattgttaaattattgtgcat                                                                                                                >  2:330042‑M1/1‑113 (MQ=255)
                            cTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttca                                                                                                            >  2:420284‑M1/1‑109 (MQ=255)
                             ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcac                                                                                                           <  2:369944‑M1/143‑36 (MQ=255)
                             ttCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataagcaattgttaaattattgtgcatttcac                                                                                                           >  1:502682‑M1/1‑108 (MQ=255)
                              tctcCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcact                                                                                                          >  1:3413‑M1/1‑107 (MQ=255)
                               ctcctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTTCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcacta                                                                                                         <  1:118457‑M1/143‑38 (MQ=255)
                                  ctcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGCAGAATAATTGAAATGGTAGTATTAGTTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattcttcaattatagtgcatttcactactc                                                                                                      >  2:352167‑M1/1‑103 (MQ=255)
                                   tcACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAAAGACAAGCGCTAAttaataatacatggtcaaattattgtgcatttcactactgg                                                                                                     >  2:117502‑M1/1‑102 (MQ=255)
                                     aCCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaa                                                                                                   <  1:672772‑M1/143‑44 (MQ=255)
                                           atGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaa                                                                                             >  2:692724‑M1/1‑94 (MQ=255)
                                            tGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCCCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattatgcatttcactactggaactgtaaa                                                                                            >  2:289892‑M1/1‑93 (MQ=255)
                                             gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                           >  1:691789‑M1/1‑92 (MQ=255)
                                             gTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatc                                                                                           <  2:152373‑M1/143‑52 (MQ=255)
                                               tATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactcgaactgtaataag                                                                                         >  2:263309‑M1/1‑90 (MQ=255)
                                                aTTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttacattttggtgcatttcactactggaactgtgctcaga                                                                                        >  1:132631‑M1/1‑89 (MQ=255)
                                                 atgtcgcAACATCATAATCCTGGGCAAGCAGAAAAATAATTGAAATGATATTATAAATTCCACTGCCTTTGGTAGAGGAAAGGGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaa                                                                                       <  2:474357‑M1/140‑56 (MQ=255)
                                                      gCCATATCATAATCCTGGGTTTGCTGAATAATAATTGACATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagat                                                                                  <  2:2848‑M1/143‑61 (MQ=255)
                                                       caacatcATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagata                                                                                 <  2:218948‑M1/141‑62 (MQ=255)
                                                        cacaTCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAGataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatag                                                                                <  1:317339‑M1/143‑63 (MQ=255)
                                                             catAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGACTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatg                                                                           >  2:243762‑M1/1‑76 (MQ=255)
                                                              atAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgc                                                                          >  2:65476‑M1/1‑75 (MQ=255)
                                                                 aTCCTGGGCTTGCTGAAGAATAATTGAAATGATATTACTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgctta                                                                       <  1:133487‑M1/143‑72 (MQ=255)
                                                                   ccTGGGCTTGCTGAAGAATAATTCAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagc                                                                     <  1:34592‑M1/143‑74 (MQ=255)
                                                                      gggCTTGCTGAAGAATAAGTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAagaataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaa                                                                  <  2:201040‑M1/143‑77 (MQ=255)
                                                                              tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatc                                                          >  1:665277‑M1/1‑59 (MQ=255)
                                                                              tGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagaaatgcttagccaatctctatt                                                          >  1:695754‑M1/1‑59 (MQ=255)
                                                                               tacgaataaGTGAAATGATATTATTATTTCCACGGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctattt                                                         <  2:144049‑M1/140‑86 (MQ=255)
                                                                                       atTGAAATGTTCTTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 <  2:300191‑M1/143‑94 (MQ=255)
                                                                                       atTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaat                                                 <  2:370295‑M1/143‑94 (MQ=255)
                                                                                         tGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattg                                               >  1:97810‑M1/1‑48 (MQ=255)
                                                                                           aaaTGATATTATTAATTCCACTGCTTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaa                                             <  2:425836‑M1/143‑98 (MQ=255)
                                                                                            aaTTATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            <  2:30381‑M1/143‑99 (MQ=255)
                                                                                            aaTGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaa                                            >  1:177251‑M1/1‑45 (MQ=255)
                                                                                                         atgccactGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaag                               <  1:632069‑M1/140‑112 (MQ=255)
                                                                                                            ccACTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggca                            <  2:350870‑M1/143‑115 (MQ=255)
                                                                                                              aCTGCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatg                          >  1:218659‑M1/1‑27 (MQ=255)
                                                                                                                 gCCTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatccgaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggat                       <  2:363593‑M1/143‑120 (MQ=255)
                                                                                                                   cTTTGGTAGAGGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgc                     >  2:616672‑M1/1‑22 (MQ=255)
                                                                                                                           gagGAAAGTGCTGAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttacggcatggatgcaagctata             <  1:12936‑M1/143‑130 (MQ=255)
                                                                                                                            agGAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatag            >  1:293210‑M1/1‑13 (MQ=255)
                                                                                                                             ggAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactataatcagaaaagatatacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctataga           <  2:47950‑M1/143‑132 (MQ=255)
                                                                                                                              gAAAGTGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagat          >  1:439332‑M1/1‑11 (MQ=255)
                                                                                                                                gagTGCTAAataataatcaattgttaaattattgtgcatttcacgactggaactgtaatcagagaagatagacaggcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattc        <  2:143837‑M1/142‑135 (MQ=255)
                                                                                                                                   tGCTAActaataataaattgtgcaatttgtctccattccacgactggaactgtaatcagaaaagatagacatgcttagacaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagatcctga     <  1:366930‑M1/143‑138 (MQ=255)
                                                                                                                                   tGCTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcaagctatagattctga     <  1:294549‑M1/143‑138 (MQ=255)
                                                                                                                                     cTAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagacaagatagacatgcttagccaatctctatttgatttaattgaaagatgtttgttaaggcatggatgcaagctatagattctgata   <  2:198199‑M1/143‑140 (MQ=255)
                                                                                                                                      tAAataataatcaattgttaaattattgtgcatttcactactggaactgtaatcagaaaagatagacatgcttagccaatctctatttgattgaattgaaagatgtttgttaaggcatggatgcacgatatgactgctgatac  >  2:538828‑M1/1‑3 (MQ=255)
                                                                                                                                        |                                                                                                                                            
CAGTTAGTTATAAGGATTTCCTTAACTGCTTCTCCTCACCATCATGTTATTTTCGCCACATCATAATCCTGGGCTTGCTGAAGAATAATTGAAATGATATTATTAATTCCACTGCCTTTGGTAGAGGAAAGTGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTACCTTCGCCGACAGTGAATTCAGCAGTAAGCGCCGTCAGACCAGAAAAGAGATTTTC  >  NC_000913/1299362‑1299638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.