Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,858 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815858 3815939 82 28 [0] [0] 27 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158570 (0.000)26 (0.670) 22/264 0.8 100% pseudogene (24/48 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH
?NC_000913 3815940 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective),enzyme, Degradation of RNA, RNase PH

AAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAC  >  NC_000913/3815806‑3816074
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ttgctaagcgcaaattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacgtttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTg                                                                                                                                <  2:10439‑M2/9‑1 (MQ=255)
          caaattcaatacaccggcgctgatatggtttcatgccttcgcccctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatg                                                                                                                      <  1:522987‑M2/19‑1 (MQ=255)
            aattcaataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAatgat                                                                                                                    <  1:651028‑M2/21‑1 (MQ=255)
               tcaacacactggtgctgatatggtgtcatgccttcgctcctcatcttacttctctacaggcaaaaaacaggcgactcatcagtcgccttaaaaatcagttggccagcgccgccttctgcCGTCCCCTGCACTTCAATGATgcg                                                                                                                 <  2:547561‑M2/24‑1 (MQ=255)
                 aataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttcgacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGcc                                                                                                               <  1:649586‑M2/26‑1 (MQ=255)
                  ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCTTCCCCTGCACTTCCATGATGCAccc                                                                                                              >  1:46021‑M2/117‑143 (MQ=255)
                  ataaactggcgctgatatggtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttcagcAGTCCCCAGAACTTCAATGATGCGccc                                                                                                              >  2:616091‑M2/117‑143 (MQ=255)
                         ggcgctgatatggtttcaggcctgcgctcctcatcttactttgctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                                                       <  1:138890‑M2/34‑1 (MQ=255)
                                       ttcatgccttcgcccctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGtt                                                                                         <  2:262617‑M2/48‑1 (MQ=255)
                                            gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGt                                                                                    >  1:464436‑M2/91‑143 (MQ=255)
                                                                ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTCCATGTCggtatcagcgcgtgggact                                                                >  2:429091‑M2/71‑134 (MQ=255)
                                                                ttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCCTCCCCTGCACTTCAATGCTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCCCTGCGGCCGAGTCt                                                                >  2:444869‑M2/71‑143 (MQ=255)
                                                                     tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAAc                                                           >  1:536633‑M2/66‑143 (MQ=255)
                                                                      acagacagaaaacaggcgactcatcagtcgccctaaaaaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                                                          <  1:11719‑M2/79‑1 (MQ=255)
                                                                        agacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTa                                                        <  1:149731‑M2/81‑1 (MQ=255)
                                                                         gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTACTCAACGTAt                                                       >  2:92765‑M2/62‑143 (MQ=255)
                                                                            aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGGCGCcaacgtcgccg                                                    >  2:488758‑M2/59‑138 (MQ=255)
                                                                                aaagggcgactcatcagtcgccttacaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                <  2:462722‑M2/89‑1 (MQ=255)
                                                                                aaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGAt                                                <  1:391556‑M2/89‑1 (MQ=255)
                                                                                       gactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTCTTCCAGATCgcaacc                                         >  1:513323‑M2/48‑141 (MQ=255)
                                                                                        actcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAAcc                                        >  1:250703‑M2/47‑143 (MQ=255)
                                                                                          tcatcagtcgccttaaaaatcagtttgccagcgccgccttctccCCGCCGCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTGCGTTCAGGTCGGTCTCTGCGGCAGAGCCTGCAACGTATTCCGGATCGCGAACCGc                                      >  2:398463‑M2/45‑143 (MQ=255)
                                                                                                     cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCACACCGCTTCGCCGTTca                           >  1:97973‑M2/34‑143 (MQ=255)
                                                                                                        aaaatccggtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTGTTCGGTCATCACTACGTTCATGTCGGTCTCCGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa                        <  2:356844‑M2/113‑1 (MQ=255)
                                                                                                        aaaaatcaggttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACaa                        <  1:492306‑M2/113‑1 (MQ=255)
                                                                                                           agtccgtttgccagcgccgcctgctgcCGTCCCCTGCACTTCAATGACGCGCCCGTCTTCGGTCATCACTCCGCTCATGTCGGTCTCTGCGGCAGCGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTc                     <  2:645305‑M2/116‑1 (MQ=255)
                                                                                                                              ccttctgcCGTCCCCTGCACTGCATTGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAc  <  1:450859‑M2/135‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                      
AAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTAC  >  NC_000913/3815806‑3816074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: