New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2017028	70 (1.040)	3 (0.050)	3/280	10.4	4.3%	coding (475/1374 nt)	fliI	flagellum‑specific ATP synthase
	?	NC_000913	= 2017106	63 (0.950)					coding (553/1374 nt)	fliI	flagellum‑specific ATP synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTATTAGGTCGCGTTCTGGACGGCAGCGGTAAACCGCTCGATGGCCTGCCCTCCCCCGATACGACGGAAACCGGTGCGCTGATTACCCCGCCATTTAACCCGTTGCAACGTACACCGATTGAACATGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2016899‑2017028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcCGGACCCGGCAAACAGCCCCATACGCTGCCCACGCCCAACGGTAAGCAGGGCATTGATTGGGCGCACGCCGGTGTCCAGCACATGTTCAATCGGTGTACGTTGCAACGGGTTAAATGGCGGGGTAATCAGCGCACCGGTTTC  <  NC_000913/2017106‑2016965                                                                                                                                                                                                                                                                                  TTATTAGGTCGCGTTCTGGACGGCAGCGGTAAACCGCTCGATGGCCTGCCCTCCCCCGATACGACGGAAACCGGTGCGCTGATTACCCCGCCATTTAACCCGTTGCAACGTACACCGATTGAACATGTGCCGGACCCcggcgg                                                                                                                                   >  1:654784/1‑137                                   CGCTCGATGGCCTGCCCTCCCCCGATACGACGGAAACCGGTGCGCTGATTACCCCGCCATCTAACCCGTTGCAACGTACACCGATTGAACATGTGCCGGACCCGGCAAACACCCCCATACGCTGCCCACGCCCAACCGTCAGC                                                                                                 >  2:278222/1‑143                                                                                   TTACCCCGCCACTTAGCCGGTTGCAACGTACACCGATTGAACATGTGCCGGACCCGGCAAACAGCCCCATACGCTGCCCACGCCCAACGGTAAGCAGGGCATTGATTGGGCGCACGCCGGTGTCCAGCACATGTTCAATCGGT                                                 <  1:278222/143‑1                                                                                                                               actCCGGACCCGGCAAACAGTCCCATACGCTGACGACGCCCAACGGCAAGCAGGGCAGTGATTGGGCGCACGCCGGCGTCCAGCACATGTTCAATCGGTGTACGTTGCAACGGGTTAAATGGCGGGGTAATCAGCGCACCGGT     <  2:192789/140‑1                                                                                                                                  CCGGACCCGGCAAACAGCCCCATACGCTGCCCACGCCCAACGGTAAGCAGGGCATTGATTGGGCGCACGCCGGTGTCCAGCACATGTTCAATCGGTGTACGTTGCAACGGGTTAAATGGCGGGGTCATCAGCGCACCGGTTTC  >  2:272156/1‑143                                                                                                                                                                                                                                                                                  TTATTAGGTCGCGTTCTGGACGGCAGCGGTAAACCGCTCGATGGCCTGCCCTCCCCCGATACGACGGAAACCGGTGCGCTGATTACCCCGCCATTTAACCCGTTGCAACGTACACCGATTGAACATGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2016899‑2017028 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcCGGACCCGGCAAACAGCCCCATACGCTGCCCACGCCCAACGGTAAGCAGGGCATTGATTGGGCGCACGCCGGTGTCCAGCACATGTTCAATCGGTGTACGTTGCAACGGGTTAAATGGCGGGGTAATCAGCGCACCGGTTTC  <  NC_000913/2017106‑2016965

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.