New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =58 (0.860)14 (0.240) 14/252 4.3 19.9% coding (290/630 nt) stfP e14 prophage, uncharacterized protein
?NC_000913 1209619 = 61 (1.020)pseudogene (1/501 nt) stfE pseudogene, e14 prophage, side tail fiber protein fragment family,Phage or Prophage Related
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927
                                                                                                                                            |                                                                                                                                         
ggtggCGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGCCACTGTGCAAACGGCTCTCGAAAACCTTg                                                                                                                                         <  2:35993/143‑1 (MQ=255)
gggggAGGCTTCCGGTGCCAGCATGGAGTAGCGGCGGCTGGAGCAGTTGCGTACCGCCCTTCGCGCGCGGCTGTGACGCCGCAAGAATCCTTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTg                                                                                                                                         <  1:1026558/140‑1 (MQ=255)
 gtggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTgg                                                                                                                                        >  2:929665/1‑143 (MQ=255)
      ggCATCCTGGTCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTGAGGTCGGTAGCGTCCGTTTGTCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:247422/143‑1 (MQ=18)
      ggCATCCGGTGCCAGCCTGGAGAAGGGGCTGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCCAACGGCTCGCGCACACCTCggcgtgg                                                                                                                                   >  2:642843/1‑138 (MQ=17)
      ggCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  1:952168/143‑1 (MQ=255)
      ggCATCCCGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTgg                                                                                                                                   <  2:390874/143‑1 (MQ=255)
       gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                  >  1:489313/1‑143 (MQ=255)
           gaggTGCCAGCCTGCAGAAGGGGCGGCACGACCAGTTACTTACCGCACTCCGCGCGCTGCTGTTAAGCCGCCAGGATCCGTTTGGCGATATCAAATCCGATGGCACTGTGCAAACTGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  1:55006/141‑1 (MQ=17)
           ccGGGGCCGGCCGGGAGAAGGGGCGGCACGACCAGTTACGTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGaa                                                                                                                              <  1:32616/143‑1 (MQ=255)
                     cccggAGAAGGGGCGGCACGACCAGCTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTCTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    <  2:594176/140‑1 (MQ=255)
                     ccTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAAc                                                                                                                    >  2:627675/1‑143 (MQ=255)
                         gagaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTaaa                                                                                                                >  2:496923/1‑143 (MQ=255)
                          agaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAAt                                                                                                               <  2:273422/143‑1 (MQ=255)
                           gaAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATg                                                                                                              <  2:807193/143‑1 (MQ=255)
                             aGGGGCGGCACGACCAGTTACTGACCGCGCTCCGCGCGCTGCTGTTAAGCCGCAAGAATCCGGTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                            <  1:361848/143‑1 (MQ=255)
                              ggggCGGCACGAGGAGGTACTGACCGCACGTCGCGCGGTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATgcag                                                                                                           <  2:138070/143‑1 (MQ=21)
                               gggCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGACGGAGCAAAACTCAATgcagc                                                                                                          >  1:378190/1‑143 (MQ=255)
                                 gcggcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        >  2:610614/1‑143 (MQ=255)
                                 gcggcACGACCAGTGACTTACCGCACTCAGCACGATGCTGTTAGGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                        <  2:590855/143‑1 (MQ=21)
                                              ttacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGATAACCTTGGTGTGGGAGACGGAACCAAACTCAATGCAGCGACGGCTACAGTAgg                                                                                           >  1:1122969/1‑143 (MQ=21)
                                               tacttacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGCAAAAGCTACATTAGGa                                                                                          >  2:208329/1‑143 (MQ=255)
                                                   tacCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAACGCGGCCACGGCTACATGAGGACGCa                                                                                      >  1:329651/1‑143 (MQ=255)
                                                    acCGCACTTGGAGCGCTGCTGTTAGGCCGCAAGAATCCGTTTGGCGATAGCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                     <  1:445040/143‑1 (MQ=25)
                                                       gCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTTAATACAGAAACGGCTACATGAGGaaggagcgg                                                                                  >  1:995294/1‑135 (MQ=18)
                                                             cgcgcgCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAACCCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCAt                                                                            <  2:299051/143‑1 (MQ=255)
                                                                gcgcTGCTGTTCAGCCGCAAGAGTCCGTGTGGCGAGGTCAAGTCGGATGGCACTGTGTGGTCGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGc                                                                         <  1:1008945/143‑1 (MQ=25)
                                                                    tgctgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCtata                                                                     >  1:38492/1‑143 (MQ=255)
                                                                    tgctgTTAAGCCGCAAGAATCCGTTTAGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATGAGGGCGCACCGGTTTCACAGCtatg                                                                     >  1:39640/1‑142 (MQ=255)
                                                                       tgTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCg                                                                  <  2:489313/143‑1 (MQ=255)
                                                                        gTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCGACGGCTACATTAGGACGCACCGGATTCATAGCTATACCgg                                                                 >  2:47333/1‑143 (MQ=255)
                                                                          tgaGCCGCAGGAATCCGTGTGCCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGtt                                                               <  2:484010/141‑1 (MQ=255)
                                                                                 cAAGAATCCGTTTGGCGATATCGAATCGGATGGAACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCGATGCAGCAACGGCTTTATTTGGACGCACCGGTTTCATAGCTATACCGGTTATGATtg                                                        <  1:1015335/143‑1 (MQ=37)
                                                                                    gagtctgTTGGGCGATATCAAATCGGTTGGCACTGTGCAAACTGCTCTCGAACACCTTGGGTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtggtg                                                     <  1:1082274/137‑1 (MQ=255)
                                                                                    gAATCCGTTGGGCGCTACCCAATCGGATGGCACTCCGCAAACCGCTCTCGCAAACCTTGGCTTGCGAGACGGAGCCACCCCCAATGCAGCAACGGCTACATTAGGACGCACCGGTCTCATAGCTATACCGGTTATGATtggtg                                                     <  2:984007/143‑1 (MQ=255)
                                                                                       tCCGTTTGGCGATACCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTa                                                  <  2:100401/143‑1 (MQ=255)
                                                                                           tttGGCGGTATGAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCGAAACTCAAGGCGGCGACGGCTACATTAGGGCGCACCGGTGTCATAGCGATACCGGTTATGATTGGTGGTATTGa                                              <  1:642843/143‑1 (MQ=37)
                                                                                           tttGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAGCGGTTAACATTGCTGGTACTGa                                              >  1:805943/1‑143 (MQ=38)
                                                                                           tttGGCGATATCAAAGCGGATGGCACTGTGCAAACGGCGCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  2:244524/143‑1 (MQ=255)
                                                                                           ttgggCGATATCAAAGCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGa                                              <  2:696227/140‑1 (MQ=255)
                                                                                                 gATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTCTGATTGGTGGTATTGAGCAATc                                        >  2:999340/1‑143 (MQ=255)
                                                                                                  atatCAAATCGGACGCCACTGTGCAAGCGGCCCCCGAAACCCTCGGTGTTGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCa                                       <  2:308894/143‑1 (MQ=255)
                                                                                                   tatCAAAGCGGGTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATccg                                      <  1:778907/143‑3 (MQ=255)
                                                                                                    atCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTGCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGt                                     >  1:286346/1‑143 (MQ=255)
                                                                                                       aaaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAAAGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGGGGTATTGAGCAATCAGTAAt                                  >  1:135298/1‑143 (MQ=255)
                                                                                                         aTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTCTTGAGCAACCCGTAATCa                                >  1:663312/1‑143 (MQ=255)
                                                                                                               tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGt                          >  1:918577/1‑143 (MQ=255)
                                                                                                               tGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGATATGATTGGTGGTATTGAGCAATAAGTAATCATTCAGt                          >  1:918586/1‑143 (MQ=255)
                                                                                                                  cACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCCATACCGGGTATGATTGGTGGTATGGAGCGATCAGTAATCATTCAGTggg                       >  2:158611/1‑143 (MQ=255)
                                                                                                                        gCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGCGCAATCAGTAATCATTCAGTGGGGGTGGa                 <  1:1018492/143‑1 (MQ=255)
                                                                                                                         cAAACGGCCCGCGAAAACCTTGGTTTGGGAGAAGTAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGaa                <  2:817166/143‑1 (MQ=255)
                                                                                                                            aCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACAGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGCGTTGAGCAACCCGCAATCCGTCCGCGGGGGGGGAAAGc             >  1:92568/1‑143 (MQ=255)
                                                                                                                              ggCTCTCGCAACCCTGGGTTTGGCAGAAGGAGCAAAACTCAAGGCAGCAACGGCTACATTAGGACGCACCGGTGTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  2:110128/143‑1 (MQ=255)
                                                                                                                              ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg           <  2:360150/143‑1 (MQ=255)
                                                                                                                                ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAACAACGGCTACACTAGGACGCACCGGTTTCATAGCTATACCGGTTATGCTTGGTGGTACTGAGCAATCAGTAATCATGCAGTGGGGGTCGAAAGCCGcc         >  1:87869/1‑142 (MQ=255)
                                                                                                                                 tctcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCCTTCAGTGGGGGTGGAATGCCGcca        >  1:655560/1‑141 (MQ=255)
                                                                                                                                   tcGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGAAGGAACTGGGCGATCAGTAATCATGCAGTGGGGGTGGAATGCCGCaaaa      >  1:402546/1‑143 (MQ=255)
                                                                                                                                    cGAAAAGCTGGGGTGGGGAGAAGGGGCAAAACTGAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATGGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAg     <  2:745498/143‑1 (MQ=255)
                                                                                                                                       aaaCGTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAt  >  2:121466/1‑143 (MQ=255)
                                                                                                                                            |                                                                                                                                         
GGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCAT  >  NC_000913/1207650‑1207927

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.