Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503 1979278 776 84 [0] [2] 86 insB1–insA insB1, insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)81 (1.280) 63/268 0.0 99.4% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 1 (0.020)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979140‑1979419
                                                                                                                                           |                                                                                                                                            
tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                           <  2:141341‑M2/4‑1 (MQ=255)
  tttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg                                                                                                                                         >  1:27324‑M2/138‑143 (MQ=255)
   ttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGt                                                                                                                                        >  2:319342‑M2/137‑143 (MQ=255)
     acacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCa                                                                                                                                      >  2:191866‑M2/135‑143 (MQ=255)
         ttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgctgccgatcccaccaccctcttcattacttaacatagattTATAAGTCatatt                                                                                                                                  >  2:35255‑M2/131‑141 (MQ=255)
           atctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttt                                                                                                                                <  2:1157425‑M2/15‑1 (MQ=255)
             ctaagatttctcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattctcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttg                                                                                                                              <  2:826383‑M2/17‑1 (MQ=255)
              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaactgaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaccataaatgTATAAGTCATactttttg                                                                                                                             >  2:609985‑M2/126‑141 (MQ=255)
              taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATActtttga                                                                                                                             >  1:991214‑M2/126‑142 (MQ=255)
               aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgtt                                                                                                                            >  2:392125‑M2/125‑143 (MQ=255)
                agatttttcctaaatcgacgcaactgtactcgtcactccacgcacatacaacggaggggggctgcgattttcaataatgcttgatgcagatcacacaaaacactcaattacttaacataactgTATAAGTCATacctttgtgt                                                                                                                           >  2:585738‑M2/124‑141 (MQ=255)
                  atttttcctaaatcgacgcaactggactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgttttg                                                                                                                         <  1:118246‑M2/22‑1 (MQ=255)
                   tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggagggtggctgcgattttccataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        >  1:249231‑M2/121‑143 (MQ=255)
                   tttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        >  1:831803‑M2/121‑143 (MQ=255)
                   tctttcctaactcgactctactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                        <  2:1029781‑M2/23‑1 (MQ=255)
                     tttcctaaatcgacgcaactgtactcgtccattgatgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                      <  2:902910‑M2/25‑1 (MQ=255)
                          taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt                                                                                                                 >  2:36685‑M2/114‑143 (MQ=255)
                           aaatcgacgcaactgtactcgtcactacacgcacatacaacggaggtgggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                <  2:506989‑M2/31‑1 (MQ=255)
                             atcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                              <  2:1011172‑M2/33‑1 (MQ=255)
                             atccacgcaactgtactcgtccctacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCa                                                                                                              <  2:310346‑M2/33‑1 (MQ=255)
                                   gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                        <  2:423495‑M2/39‑1 (MQ=255)
                                   gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt                                                                                                        <  1:215260‑M2/39‑1 (MQ=255)
                                    caactggactcggcactacacgcacatgcaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcacttacttaacatacatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                       <  2:234807‑M2/40‑1 (MQ=255)
                                         gtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaaa                                                                                                  <  2:935764‑M2/45‑1 (MQ=255)
                                            ctcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGtt                                                                                               <  2:1051246‑M2/48‑1 (MQ=255)
                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                              <  2:111077‑M2/49‑1 (MQ=255)
                                             tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                                                                              >  1:782941‑M2/95‑143 (MQ=255)
                                               gtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                            <  2:713281‑M2/51‑1 (MQ=255)
                                                 cactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcg                                                                                          <  2:397698‑M2/53‑1 (MQ=255)
                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcggatcacacaaaacactccattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTggcta                                                                                       >  2:693170‑M2/88‑143 (MQ=255)
                                                    tacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta                                                                                       >  2:997512‑M2/88‑143 (MQ=255)
                                                      cacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacg                                                                                     <  2:2176‑M2/58‑1 (MQ=255)
                                                         gaacatccgagggggggcggctgcgattttcgataatgcgtgatgcagatcacacaaaactctcaattgcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta                                                                                  <  1:74634‑M2/61‑1 (MQ=255)
                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                >  2:313690‑M2/81‑143 (MQ=255)
                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCCGATATAACTTTTTGCGCTACGCtagg                                                                                >  2:33264‑M2/81‑142 (MQ=255)
                                                           acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacgtaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagc                                                                                <  1:498695‑M2/63‑1 (MQ=255)
                                                              tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaag                                                                             <  1:325484‑M2/66‑1 (MQ=255)
                                                                 aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTTGGTGTATTTCACTCTGTTACAAAGTTTCTCGCTACGctagccagcca                                                                          >  1:354986‑M2/75‑141 (MQ=255)
                                                                    ggcggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                       <  1:299932‑M2/72‑1 (MQ=255)
                                                                    ggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                       <  1:184881‑M2/72‑1 (MQ=255)
                                                                     gagggtggctgcgattttcaatattgagtgatgcatatgacacaaaacactcaattgcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                      <  1:189586‑M2/73‑1 (MQ=255)
                                                                           ggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACa                                                                >  2:68135‑M2/65‑143 (MQ=255)
                                                                            gcttcgattttcagtaatgcgtgatgcagatcacacagaacactcaagtacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                               <  1:94932‑M2/80‑1 (MQ=255)
                                                                            gcagccattatcaataatgagtaatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTACAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAg                                                               <  1:222525‑M2/80‑1 (MQ=255)
                                                                              tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTacgctagcaagcaaacttcataatgga                                                             >  1:244‑M2/62‑131 (MQ=255)
                                                                              tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                             >  1:482172‑M2/62‑143 (MQ=255)
                                                                              ggcgattttcaataatgcgggatgcatgtcacacataactctcaatttcttaacatgaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                             <  1:270136‑M2/82‑1 (MQ=255)
                                                                                   ttttcaagaatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                        <  2:892943‑M2/87‑1 (MQ=255)
                                                                                   ttctaaattatgcgtgatgcagaacacacaaaacactcaattacttgtcataactcTATATTTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGaataat                                                        <  1:697780‑M2/87‑1 (MQ=255)
                                                                                     ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATACGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCg                                                      >  1:89782‑M2/55‑143 (MQ=255)
                                                                                      tcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGa                                                     >  2:252605‑M2/54‑143 (MQ=255)
                                                                                         ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCGTACTTTTGTATTGGGAGTATTTCAATCTGTTAAAAAGTTTGTCGGTACGCTAGCAAGCaagaatgaagcagggagaagagaagt                                                  >  2:475191‑M2/51‑131 (MQ=255)
                                                                                         ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATCATCGAAAt                                                  >  2:613980‑M2/51‑143 (MQ=255)
                                                                                         ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAAt                                                  <  1:67476‑M2/93‑1 (MQ=255)
                                                                                           aatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                <  2:251732‑M2/95‑1 (MQ=255)
                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacatagatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGa                                              <  1:1130796‑M2/97‑1 (MQ=255)
                                                                                             tgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATCCTTTTGTTTTGCGTGTCTTTCCATCTGTTAAAAAGTTTTTCGCTACGCCAGCAAGCCACCACGAAACCGGCATAATCCAactgcgc                                              >  1:316109‑M2/47‑140 (MQ=255)
                                                                                                   atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgc                                        >  1:385345‑M2/41‑143 (MQ=255)
                                                                                                    tgcagatgacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAGAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                       <  1:763834‑M2/104‑1 (MQ=255)
                                                                                                        gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                   <  2:949314‑M2/108‑1 (MQ=255)
                                                                                                        gatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGcaca                                   <  2:219750‑M2/108‑1 (MQ=255)
                                                                                                         atcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAg                                  >  2:648370‑M2/35‑143 (MQ=255)
                                                                                                          tcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGt                                 >  2:1046104‑M2/34‑143 (MQ=255)
                                                                                                             cacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCACACAGTCaa                              >  1:315847‑M2/31‑143 (MQ=255)
                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaaa                             <  2:352557‑M2/114‑1 (MQ=255)
                                                                                                              acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTACTTCAATCTGTTAAAAAGTTTTTCGCTCCGCTAGCAAGCAAACATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGtcaga                             >  2:188551‑M2/30‑141 (MQ=255)
                                                                                                                aaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAAt                           >  2:874542‑M2/28‑143 (MQ=255)
                                                                                                                  aacactccattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  2:408844‑M2/118‑1 (MQ=255)
                                                                                                                  aacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAGCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATaa                         <  1:580329‑M2/118‑1 (MQ=255)
                                                                                                                    cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATCATCGAAATGGGATGTTGAGCACAGTCAAAATAACt                       >  1:613606‑M2/24‑143 (MQ=255)
                                                                                                                     actcaattacttaacataaatgTATAAGTCATACTTTGGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTc                      >  2:275293‑M2/23‑143 (MQ=255)
                                                                                                                      ttcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                     <  1:541640‑M2/122‑1 (MQ=255)
                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAATCAc                    >  2:977299‑M2/21‑143 (MQ=255)
                                                                                                                       tcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATATGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCACACAGTCAAAAAAACTCAc                    >  1:839933‑M2/21‑143 (MQ=255)
                                                                                                                        gacttactgaccAGAAATGTATAAGTCATACTTTTTTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCAcc                   <  2:27324/133‑1 (MQ=255)
                                                                                                                         aattacttaacataaatgTATAAGTCATCCTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAACTGGGATGTTGCGCACAGTCAAAATAACTCACCg                  >  2:141249‑M2/19‑143 (MQ=255)
                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGCAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                  >  2:676165‑M2/19‑143 (MQ=255)
                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                  >  2:182484‑M2/19‑143 (MQ=255)
                                                                                                                         aattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCg                  >  2:189328‑M2/19‑143 (MQ=255)
                                                                                                                             acttaccataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTaaa              <  2:86904‑M2/129‑1 (MQ=255)
                                                                                                                              cttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCgtaact             >  2:479133‑M2/14‑141 (MQ=255)
                                                                                                                                  acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAatc         <  1:260228‑M2/134‑1 (MQ=255)
                                                                                                                                    ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAAGTCACCGTAAATAatcat       >  2:406690‑M2/8‑143 (MQ=255)
                                                                                                                                      aaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCTTAAATAATCATCt     >  2:720987‑M2/6‑143 (MQ=255)
                                                                                                                                        atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc   <  1:521372‑M2/140‑1 (MQ=255)
                                                                                                                                         tGTATAAGTCATACTTTTGTTTTGGGTTTATTTCAATCTGTTATAAAGTTTTTCGCTACGCTATCTAGTTTTTTTTTTTTTGTATTTATTGAAATGGGAGGTTGCGCACAGGCAAAATAACTCACCGTAAATACTCATCTGCt  <  2:316773/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                            
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCT  >  NC_000913/1979140‑1979419

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: