Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,979,486 IS5 (+) +4 bp intergenic (‑271/‑264) insA ← / → uspC IS1 repressor TnpA/universal stress protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1979486 =0 (0.000)134 (1.360) 91/286 0.0 100% intergenic (‑271/‑267) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 2101749 = NA (NA)noncoding (1195/1195 nt) IS5 repeat region
* ? NC_000913 = 19794890 (0.000)70 (0.710) 54/286 1.1 100% intergenic (‑274/‑264) insA/uspC IS1 repressor TnpA/universal stress protein
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region

Only 100 of 193 total aligned reads displayed.

CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTA  >  NC_000913/1979341‑1979636
                                                                                                                                                    |                                                                                                                                                   
aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                     >  2:128636‑M1/146‑149 (MQ=255)
aactggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTaa                                                                                                                                                     <  2:53605‑M1/4‑1 (MQ=255)
 actggggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAAt                                                                                                                                                    >  6:76009‑M1/145‑149 (MQ=255)
   gCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAgg                                                                                                                                                   >  7:87356‑M1/1‑146 (MQ=255)
    cAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaa                                                                                                                                                 <  4:316759‑M1/149‑5 (MQ=255)
     gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaaa                                                                                                                                                >  6:29218‑M1/141‑149 (MQ=255)
     gggataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTaa                                                                                                                                                 >  4:47158‑M1/141‑148 (MQ=255)
       gataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAGATa                                                                                                                                              >  1:76049‑M1/139‑149 (MQ=255)
        ataacgccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATa                                                                                                                                              <  2:18485‑M1/11‑1 (MQ=255)
              ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaaga                                                                                                                                        <  7:81495‑M1/17‑1 (MQ=255)
              ccttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaaga                                                                                                                                        <  2:237370‑M1/17‑1 (MQ=255)
               cttaaatggcgaagaaacggtctaaataggctgattcaagtcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACaaagaaa                                                                                                                                      >  7:127763‑M1/131‑149 (MQ=255)
                ttaaatggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgacttagtcagccgagaagaatttacccgcttattcgcaccttccCTAATTAAATACaaagaaag                                                                                                                                     <  1:32841‑M1/20‑1 (MQ=255)
                    atggcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaa                                                                                                                                 <  4:299471‑M1/24‑1 (MQ=255)
                       gcgaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGcaacaa                                                                                                                              >  1:41458‑M1/123‑149 (MQ=255)
                        tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgat                                                                                                                             <  1:133664‑M1/149‑25 (MQ=255)
                        tCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctga                                                                                                                              >  8:146478‑M1/1‑125 (MQ=255)
                         gaagaaacggtctaaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAt                                                                                                                             <  4:170386‑M1/28‑1 (MQ=255)
                          gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                           >  7:242072‑M1/1‑123 (MQ=255)
                          gAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTAATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctcatat                                                                                                                           >  5:145664‑M1/1‑123 (MQ=255)
                             aTGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatat                                                                                                                           >  2:42414‑M1/1‑120 (MQ=255)
                              tGGGATGTTGCGCACATTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgaga                                                                                                                       <  4:112470‑M1/149‑31 (MQ=255)
                                ggATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatc                                                                                                                     <  7:146478‑M1/149‑33 (MQ=255)
                                  aTGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcat                                                                                                                   <  1:88244‑M1/149‑35 (MQ=255)
                                     ttGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                                 <  6:262736‑M1/148‑37 (MQ=255)
                                     taaataggctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgtt                                                                                                                 <  5:336604‑M1/40‑1 (MQ=255)
                                            gctgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAAt                                                                                                         >  6:32710‑M1/102‑149 (MQ=255)
                                              tgattcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGATATGt                                                                                                       <  5:399358‑M1/50‑1 (MQ=255)
                                                cAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAggaaggtgcgaacaagtccctgatagtagatcatgtttgtcatctg                                                                                                       >  4:120141‑M1/1‑101 (MQ=255)
                                                attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACttaatgt                                                                                                                  >  5:137190‑M1/98‑136 (MQ=255)
                                                attcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                     >  4:235272‑M1/98‑149 (MQ=255)
                                                 ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                     <  7:223229‑M1/52‑1 (MQ=255)
                                                 ttcaaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaaagactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAAACAACTTAAAGTTAATGAAATGttt                                                                                                     <  6:221853‑M1/52‑1 (MQ=255)
                                                 aaaaTAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggag                                                                                                    >  8:273129‑M1/1‑100 (MQ=255)
                                                    aaggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttatacgcaccttccCTAATTAAATACAAAGAAAGTCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                                 <  3:47693‑M1/56‑1 (MQ=255)
                                                     aggcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACa                                                                                                 <  8:120332‑M1/56‑1 (MQ=255)
                                                     aggcatttacgggagaaaaaatcggcgcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACat                                                                                                >  5:204466‑M1/93‑149 (MQ=255)
                                                       gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatat                                                                                              >  7:120332‑M1/91‑149 (MQ=255)
                                                       aCTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                               <  1:291045‑M1/148‑55 (MQ=255)
                                                          tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACatatat                                                                                            <  1:307661‑M1/61‑1 (MQ=255)
                                                          tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATAtt                                                                                           >  1:237370‑M1/88‑149 (MQ=255)
                                                             cGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaataagtccctgatatgagatcatgtttgtcatctggagccatagaacagg                                                                                        <  2:236183‑M1/149‑62 (MQ=255)
                                                              gTAAATAATCATCTGCTATATAAAATCACTTTCATGCAATACCATATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTACggaaggtgcgtacaagtccgtgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                       <  6:145664‑M1/149‑63 (MQ=255)
                                                              gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                       >  4:198216‑M1/1‑87 (MQ=255)
                                                              gTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAAATAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg                                                                                       >  6:180199‑M1/1‑87 (MQ=255)
                                                              cgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAcc                                                                                       >  5:64648‑M1/84‑149 (MQ=255)
                                                              cgggagaaaaaatcggatcaaacatgaagaaatgaactgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAAc                                                                                        >  8:97832‑M1/84‑148 (MQ=255)
                                                               tAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                      >  4:273472‑M1/1‑86 (MQ=255)
                                                               gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCa                                                                                      >  6:372776‑M1/83‑149 (MQ=255)
                                                                aaaTAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACATCAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggt                                                                                      <  7:359950‑M1/148‑64 (MQ=255)
                                                                  agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                     <  1:103100‑M1/52‑1 (MQ=255)
                                                                  agaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGttt                                                                                                     >  2:103100‑M1/80‑131 (MQ=255)
                                                                     atcatcTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc                                                                                 <  2:268587‑M1/148‑69 (MQ=255)
                                                                     aaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGtt                                                                                <  1:344544‑M1/73‑1 (MQ=255)
                                                                        aatctgctcaaacatgtataattgaaatgactgagtcagccgagaagaatttccccgattattcgcaccttccCTAATTAAATACAAAGAAAGGCAACTATCATCTTAATGTTATTGAAATGTTTTACATTTATTATCGACTTGTTTaa                                                                             >  4:348571‑M1/74‑149 (MQ=255)
                                                                         atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                            >  1:18485‑M1/73‑149 (MQ=255)
                                                                         atcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                            >  2:403589‑M1/73‑149 (MQ=255)
                                                                           tGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc                                                                          <  5:95160‑M1/149‑76 (MQ=255)
                                                                            ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                         >  5:243568‑M1/70‑149 (MQ=255)
                                                                            ggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCg                                                                         >  8:81495‑M1/70‑149 (MQ=255)
                                                                             cTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                        >  4:380809‑M1/1‑72 (MQ=255)
                                                                              tataAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                                        >  6:125058‑M1/1‑71 (MQ=255)
                                                                               ataaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaaaaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                       >  5:298506‑M1/1‑70 (MQ=255)
                                                                                taaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatc                                                                       <  8:36612‑M1/147‑79 (MQ=255)
                                                                                taaataaTCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACAGAACAACAAACTAAggaaggtgcgaacaagtacatgatattagatcatgtttttcatctttagccatagaacagggttcatcatgagtcagc                                                                       <  7:282186‑M1/147‑79 (MQ=255)
                                                                                    catgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTAAATATATTAACCACTTGTTTAATGCGGAGAATCa                                                                 <  4:68417‑M1/88‑1 (MQ=255)
                                                                                     atgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAg                                                                >  6:55465‑M1/61‑149 (MQ=255)
                                                                                                 aatgactgagtcagccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                    >  6:206997‑M1/49‑149 (MQ=255)
                                                                                                 aatgactgagtcagccgagaagaagttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTc                                                    <  4:252919‑M1/101‑1 (MQ=255)
                                                                                                  cAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagt                                                   <  3:273472‑M1/149‑99 (MQ=255)
                                                                                                   aaTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                               >  5:170899‑M1/1‑50 (MQ=255)
                                                                                                   aaTACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccata                                                                                               <  6:170899‑M1/104‑55 (MQ=255)
                                                                                                       ccAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt                                              <  5:328550‑M1/149‑104 (MQ=255)
                                                                                                          gtccgccgagaagaatttccccgcttattcgcaccttccCTAATTAAATAGAAAGAAAGGCAACAATCAACTTAATGTTATTGAAATGTATTCCATATATTAACCCCTAGTTTAATGCGGAGAATCAGTACAGTATTTTCTTATAATTa                                           <  2:363311‑M1/110‑1 (MQ=255)
                                                                                                          gATAAGCTATTTTTAACCAGACACTTAACGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatggttggcatctgcagccatagaacagggttcatcatgagtcctcaacttcccttcgcagaccttgaagtcag                                           >  4:16788‑M1/1‑43 (MQ=255)
                                                                                                          gATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcag                                           <  3:368535‑M1/149‑107 (MQ=255)
                                                                                                              gccgagaagaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACAtt                                       >  5:318078‑M1/36‑149 (MQ=255)
                                                                                                              aGCTATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcattagtcatcaacttaccttcgccgacagtgaattcagcag                                        <  5:180199‑M1/148‑110 (MQ=255)
                                                                                                                 tATTTTTAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag                                    >  5:365457‑M1/1‑36 (MQ=255)
                                                                                                                    ttttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc                                 >  7:348478‑M1/1‑33 (MQ=255)
                                                                                                                     tttAAACAGACACTTACCGCACAACAAACTAAggaaggtgcgaacaagtccctgataagagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacctacgccgccagtgaattcagcagtaagcgcc                                >  7:343685‑M1/1‑32 (MQ=255)
                                                                                                                      gaatttccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATta                               <  3:209413‑M1/122‑1 (MQ=255)
                                                                                                                            ccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa                          >  2:32841‑M1/22‑148 (MQ=255)
                                                                                                                            ccccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGa                          >  3:299471‑M1/22‑148 (MQ=255)
                                                                                                                            aGACACTTTCCGCACTACAAACTAAggaatgtgcgaacaagtcccttatatgagatcatgtttgtcatctggagccatcgaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac                         <  6:190867‑M1/149‑125 (MQ=255)
                                                                                                                             cccgcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAAt                                                                            <  2:260191‑M1/77‑1 (MQ=255)
                                                                                                                                gcttattcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCAcc                     <  3:40091‑M1/132‑1 (MQ=255)
                                                                                                                                    attcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa                 <  4:307897‑M1/136‑1 (MQ=255)
                                                                                                                                     ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa                 >  8:252415‑M1/13‑148 (MQ=255)
                                                                                                                                     ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGa                 >  4:45260‑M1/13‑148 (MQ=255)
                                                                                                                                     ttcgcaccttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAg                <  3:234804‑M1/137‑1 (MQ=255)
                                                                                                                                     ccGCACAACAAACTAAggaaggtgcgaacaagtcccttatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga                <  3:120141‑M1/149‑134 (MQ=255)
                                                                                                                                      cGCACAACAAACTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaa                  >  7:198394‑M1/1‑15 (MQ=255)
                                                                                                                                         acaacaAACTAAggaaggtgcgaacaagtccctgatatgagatcatgt                                                                                                                 <  3:17678‑M1/48‑37 (MQ=255)
                                                                                                                                          accttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgatt           <  4:160107‑M1/142‑1 (MQ=255)
                                                                                                                                            cttccCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattga         <  4:148679‑M1/144‑1 (MQ=255)
                                                                                                                                            cttccCTAATTAAATAAAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGtgattga         >  3:288631‑M1/6‑149 (MQ=255)
                                                                                                                                                cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTaa     >  6:349510‑M1/2‑149 (MQ=255)
                                                                                                                                                cCTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTaa     <  5:259428‑M1/148‑1 (MQ=255)
                                                                                                                                                 cTAATTAAATACAAAGAAAGGCAACCATAAACTTAATGTTAATGAAATGTTTTACATATATTAACCACATGTTTAATGAGGAGAATAAGTACACAATTTTCTTATAATTAAAATTGAAATTATATGATCACCGGGAGTTAATGatttat    >  2:284952/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAATCACTTTCATGCAATACCAGATAAGCTATTTTTAAACAGACACTTACCGCACAACAAACTAATTAAATACAAAGAAAGGCAACAATCAACTTAATGTTAATGAAATGTTTTACATATATTAACCACTTGTTTAATGCGGAGAATCAGTACACTATTTTCTTATAATTACATTTGAAATTATATGATCACCGGGAGTGATTGATTAATTA  >  NC_000913/1979341‑1979636

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.