Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC NC_000913 3,771,709 IS3 (–) +3 bp 100% coding (34‑36/363 nt) yibI ← DUF3302 family inner membrane protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1095502NA (NA)80 (1.000) 57/244 NT 100% noncoding (1/1258 nt) IS3 repeat region
?NC_000913 3771709 = 0 (0.000)coding (36/363 nt) yibI DUF3302 family inner membrane protein
* ? NC_000913 = 2171428NA (NA)64 (0.790) 49/248 NT 100% noncoding (1258/1258 nt) IS3 repeat region
?NC_000913 = 3771711 0 (0.000)coding (34/363 nt) yibI DUF3302 family inner membrane protein

Only 100 of 167 total aligned reads displayed.

AAACGGCCAGATAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCATAACAC  >  NC_000913/3771562‑3771852
                                                                                                                                                   |                                                                                                                                               
 agcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagaggttactcacttagccgcgtgtccactattgcggggtaagatcaga                                                                                                                                                <  6:115027‑M2/2‑1 (MQ=255)
  gcaagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcagat                                                                                                                                               <  4:136460‑M2/3‑1 (MQ=255)
   caagcttcagggcttcactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcagatc                                                                                                                                              <  3:202394‑M2/4‑1 (MQ=255)
      ccAGATAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgat                                                                                                                                           >  7:66837‑M2/1‑144 (MQ=255)
      ccAGATAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgat                                                                                                                                           >  2:320482‑M2/1‑144 (MQ=255)
          aTAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatccta                                                                                                                                       <  5:197007‑M2/148‑9 (MQ=255)
           tAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCAAGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctac                                                                                                                                      <  7:105195‑M2/148‑10 (MQ=255)
                  cactgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcagat                                                                                                                                               <  1:34098‑M2/3‑1 (MQ=255)
                     tgcgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGaaa                                                                                                                            >  4:100335‑M2/127‑148 (MQ=255)
                     agTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaata                                                                                                                            >  2:229684‑M2/1‑129 (MQ=255)
                     agTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaata                                                                                                                            >  6:197007‑M2/1‑129 (MQ=255)
                      gTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaat                                                                                                                             >  8:316848‑M2/1‑128 (MQ=255)
                       cgaaattcaggcgaatgctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATa                                                                                                                          <  7:54480‑M2/24‑1 (MQ=255)
                        aaaCAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatg                                                                                                                          <  6:340396‑M2/147‑22 (MQ=255)
                           tttctggcgaatgctgtttacggggttttttactgtttgatactgtttttgtcatgttagtcacctctgactgagagtttactcacttagcctcgtgtccactattgctgggtaagatcaGATCAGCACTCCGAACGCGAAATAtttt                                                                                                                      <  5:481‑M2/28‑1 (MQ=255)
                                        ctgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTg                                                                                                         <  5:323118‑M2/41‑1 (MQ=255)
                                         tgtttacggggttttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGc                                                                                                        >  6:65983‑M2/107‑148 (MQ=255)
                                                aTGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgat                                                                                                                                           >  5:119022‑M2/1‑102 (MQ=255)
                                                      ttttactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGt                                                                                           >  5:49937‑M2/94‑148 (MQ=255)
                                                         tactggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGttt                                                                                         <  3:77220‑M2/57‑1 (MQ=255)
                                                           cGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacac                                                                                                                     <  2:314386‑M2/117‑27 (MQ=255)
                                                             ggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCgg                                                                                                   <  3:326404‑M2/47‑1 (MQ=255)
                                                             ggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCgg                                                                                                   >  4:326404‑M2/87‑133 (MQ=255)
                                                             ggttgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTAt                                                                                       >  1:59416‑M2/87‑145 (MQ=255)
                                                             gCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgagggtcttgttttcaaattgtt                                                                                    >  3:155907‑M2/1‑89 (MQ=255)
                                                              cATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacagg                                                                                                                  >  8:25892‑M2/1‑88 (MQ=255)
                                                              cATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacagg                                                                                                                  <  7:25892‑M2/117‑30 (MQ=255)
                                                                tgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcagatc                                                                                                                                              >  1:251189‑M2/84‑87 (MQ=255)
                                                                tgatactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcagatc                                                                                                                                              <  2:251189‑M2/4‑1 (MQ=255)
                                                                 ggggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaa                                                                                         >  3:41346‑M2/1‑85 (MQ=255)
                                                                 ggggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtga                                                                                                                                            <  3:119788‑M2/88‑4 (MQ=255)
                                                                 ggggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtga                                                                                                                                            >  4:119788‑M2/1‑85 (MQ=255)
                                                                 ggggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGAAtgatcctacccacgtaatatggacacaggcctaagcgagcttcttgttttcaaaatgtaccg                                                                                 <  4:66778‑M2/147‑63 (MQ=255)
                                                                  gggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgg                                                                                >  1:319087‑M2/1‑84 (MQ=255)
                                                                  gggATGGTTGCGATTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATAACCAGAAAGACGAAGATtgatccttccgacgtaatatggacacaggcataagcgaggttcttgttttcaaattgttccgg                                                                                >  5:375200‑M2/1‑84 (MQ=255)
                                                                   tactgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGtgttgt                                                                              >  3:237159‑M2/81‑148 (MQ=255)
                                                                   ggATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggac                                                                              <  6:85151‑M2/148‑66 (MQ=255)
                                                                    actgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCa                                                                                     >  8:369309‑M2/80‑140 (MQ=255)
                                                                    actgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCa                                                                                     <  7:369309‑M2/61‑1 (MQ=255)
                                                                     ctgtttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGttt                                                                            <  4:237159‑M2/70‑1 (MQ=255)
                                                                        tttttgtcatgtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTg                                                                         <  4:198706‑M2/73‑1 (MQ=255)
                                                                        gTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgagg                                                                         <  8:346178‑M2/148‑71 (MQ=255)
                                                                         ttGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctaccc                                                                                                                                    <  2:122140‑M2/88‑12 (MQ=255)
                                                                         ttGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctaccc                                                                                                                                    >  1:122140‑M2/1‑77 (MQ=255)
                                                                                  gtgagtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATc                                                                                      >  3:26155‑M2/66‑125 (MQ=255)
                                                                                      gtcacctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGa                                                           <  2:149488‑M2/87‑1 (MQ=255)
                                                                                         tCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgcc                                                                    >  3:321375‑M2/1‑61 (MQ=255)
                                                                                         tCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgcc                                                                    <  4:321375‑M2/136‑76 (MQ=255)
                                                                                         acctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGa                                                           <  6:95136‑M2/87‑1 (MQ=255)
                                                                                          cctctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAgg                                                        >  2:258071‑M2/58‑147 (MQ=255)
                                                                                            tctgactgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGa                                                           >  8:224978‑M2/56‑142 (MQ=255)
                                                                                              tAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaact                                                           >  7:348911‑M2/1‑56 (MQ=255)
                                                                                                actgagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTc                                                   <  3:222930‑M2/95‑1 (MQ=255)
                                                                                                   gagagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCCCGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCt                                              >  6:298229‑M2/49‑148 (MQ=255)
                                                                                                    agagtttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCt                                              >  3:52237‑M2/48‑147 (MQ=255)
                                                                                                      gTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccga                                           <  2:42934‑M2/148‑101 (MQ=255)
                                                                                                      gTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttc                                                                                            >  3:191082‑M2/1‑48 (MQ=255)
                                                                                                      gTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttc                                                                                            <  4:191082‑M2/99‑52 (MQ=255)
                                                                                                       tCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgat                                          <  6:100738‑M2/148‑102 (MQ=255)
                                                                                                         ttactcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGa                                                           <  1:29553‑M2/87‑1 (MQ=255)
                                                                                                          tGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccccaccaactgtgccgccgccaccgattg                                        <  7:177601‑M2/147‑104 (MQ=255)
                                                                                                           actcacttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTATTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATAtttt                                      >  7:294343‑M2/41‑148 (MQ=255)
                                                                                                            tATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaa                                     <  1:166485‑M2/148‑107 (MQ=255)
                                                                                                            tATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgta                                      >  7:346178‑M2/1‑42 (MQ=255)
                                                                                                               cgcgATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactg                                                                            >  5:83360‑M2/1‑39 (MQ=255)
                                                                                                               cgcgATGATTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgga                                                                               >  1:231974‑M2/1‑39 (MQ=255)
                                                                                                               acttagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGt                                                                                                                        <  5:293516‑M2/26‑1 (MQ=255)
                                                                                                                 cgATGATTACATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccaca                                                                 >  6:49422‑M2/1‑37 (MQ=255)
                                                                                                                  tagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACaat                                >  1:10677‑M2/34‑147 (MQ=255)
                                                                                                                  tagccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACaat                                >  2:69121‑M2/34‑147 (MQ=255)
                                                                                                                  gatgatTCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacat                               <  8:174395‑M2/148‑113 (MQ=255)
                                                                                                                   agccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACaat                                <  4:52237‑M2/114‑1 (MQ=255)
                                                                                                                   agccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAAGGAGTCAGGCTGATATTTTGACaat                                <  1:204424‑M2/114‑1 (MQ=255)
                                                                                                                   agccgcgtgtccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTCCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACaat                                <  1:258071‑M2/114‑1 (MQ=255)
                                                                                                                       ttCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacatt                              >  5:91391‑M2/1‑31 (MQ=255)
                                                                                                                        tCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgata                         <  1:92876‑M2/148‑119 (MQ=255)
                                                                                                                        tCCATAAAAAATCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccgg                                                                                >  7:253106‑M2/1‑30 (MQ=255)
                                                                                                                          tgtccactattgctgggtaagatcaGCTCAGCACTCCCAACGCGAATTTGTTTAGAAACATATCTGCCTCGGATTGACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACATTAATCCGGGt                       <  6:162294‑M2/123‑1 (MQ=255)
                                                                                                                             ccactattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTcg                    >  8:351479‑M2/23‑148 (MQ=255)
                                                                                                                             aaaaaaTCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataat                     <  7:215432‑M2/147‑123 (MQ=255)
                                                                                                                             aaaaaaTCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgcca                                                                   <  3:354671‑M2/101‑77 (MQ=255)
                                                                                                                               aaaaTCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataattaa                  >  2:92876‑M2/1‑23 (MQ=255)
                                                                                                                                 tattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGAc                                   <  6:271351‑M2/111‑1 (MQ=255)
                                                                                                                                 tattgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGAc                                   >  5:271351‑M2/19‑129 (MQ=255)
                                                                                                                                  attgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGa                 >  8:205982‑M2/18‑146 (MQ=255)
                                                                                                                                  attgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGAtt               >  5:160932‑M2/18‑148 (MQ=255)
                                                                                                                                  attgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGAtt               >  5:67814‑M2/18‑148 (MQ=255)
                                                                                                                                  attgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGAt                >  1:374049‑M2/18‑147 (MQ=255)
                                                                                                                                  aTCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataatta                   <  6:151765‑M2/144‑125 (MQ=255)
                                                                                                                                  aTCACCAGAAAGACGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataatta                   >  5:151765‑M2/1‑20 (MQ=255)
                                                                                                                                   ttgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGAt                <  7:205982‑M2/130‑1 (MQ=255)
                                                                                                                                   ttgctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATtc              <  8:294343‑M2/132‑1 (MQ=255)
                                                                                                                                      ctgggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGAGATTCTCg           >  8:274960‑M2/14‑148 (MQ=255)
                                                                                                                                         ggtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCa        <  6:67814‑M2/138‑1 (MQ=255)
                                                                                                                                          gtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGc                                                                  >  1:190572‑M2/10‑89 (MQ=255)
                                                                                                                                          gtaagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGc                                                                  <  2:190572‑M2/80‑1 (MQ=255)
                                                                                                                                           taagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCATa      <  8:213157‑M2/140‑1 (MQ=255)
                                                                                                                                           taagatcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCATa      <  4:355568‑M2/140‑1 (MQ=255)
                                                                                                                                              aCGAAGATtgatcctacccacgtaatatggacacaggcctaagcgaggttcttgttttcaaattgttccggactgaggccgccacaccaactgtgccgccgccaccgattgtaatcacattcgatataattaa                  <  2:284855‑M2/133‑126 (MQ=255)
                                                                                                                                                tcaGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCTGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCAGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCATAacac  >  7:119618‑M2/4‑147 (MQ=255)
                                                                                                                                                   |                                                                                                                                               
AAACGGCCAGATAACATGCAGAGTAAACAGGCTCACCCAGCCCGCCGTATGAATAGCGTCGGCATGGGGATGGTTGCGCTTTTTGGCAATCAGATAAGGGATGTCATGTATCGCGATGATTCCATAAAAAATCACCAGAAAGACGAAGATCAGCACTCCCAACGCGAAATAGTTTAGAAACATATCTGCCTCGGATTCACGTTTATCAGTGTTGTTTTTGGGCTGGCAGCCAGAAGGGAGTCAGGCTGATATTTTGACAATAATCCGGGTTCGCGATTCTCGCCATAACAC  >  NC_000913/3771562‑3771852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.