Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 3,801,411 IS5 (–) +4 bp coding (586‑589/1017 nt) waaR ← lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2288919 =NA (NA)36 (1.030) 29/254 0.3 100% noncoding (1195/1195 nt) IS5 repeat region
?NC_000913 = 3801414 0 (0.000)coding (586/1017 nt) waaR lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase
* ? NC_000913 = 2290113NA (NA)60 (1.720) 39/254 0.1 100% noncoding (1/1195 nt) IS5 repeat region
?NC_000913 3801411 = 0 (0.000)coding (589/1017 nt) waaR lipopolysaccharide 1,2‑glucosyltransferase; UDP‑glucose:(glucosyl)LPS alpha‑1,2‑glucosyltransferase

TTTAATTCACTTTTAATTGTATAAATTGTATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT  >  NC_000913/3801266‑3801558
                                                                                                                                                    |                                                                                                                                                
gacaagaaaatctcttttctggtcagacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                                                                  >  4:9601‑M2/146‑149 (MQ=255)
gacaagaaaatctcttttctggtcagacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                                                                  <  3:9601‑M2/4‑1 (MQ=255)
 acaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt                                                                                                                                                 <  1:90288‑M2/5‑1 (MQ=255)
    agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGtttt                                                                                                                                              <  2:132851‑M2/8‑1 (MQ=255)
      aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTtagtttgtt                                                                                                                                            <  2:153006‑M2/10‑4 (MQ=255)
         cTTTTAATTGTATAAATTGTATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgc                                                                                                                                         >  7:87617‑M2/1‑140 (MQ=255)
          tctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGt                                                                                                                                          >  5:50937‑M2/136‑147 (MQ=255)
             cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt                                                                                                                                                 <  5:167095‑M2/5‑1 (MQ=255)
             cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGt                                                                                                                                                 >  6:167095‑M2/133‑137 (MQ=255)
               aTTGTATAAATTGTATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaat                                                                                                                                     <  1:11234‑M2/147‑14 (MQ=255)
                  gTATAAATTGTATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcg                                                                                                                                <  4:82867‑M2/149‑19 (MQ=255)
                      tctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCAtttttt                                                                                                                             >  7:149956‑M2/124‑148 (MQ=255)
                         ttgtattgtaCTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaat                                                                                                                         <  2:73910‑M2/149‑26 (MQ=255)
                          acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTaa                                                                                                                          <  8:149956‑M2/28‑1 (MQ=255)
                          acggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTCAAGt                                                                                                                        <  6:50937‑M2/30‑1 (MQ=255)
                            tattgtaCTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattc                                                                                                                       >  1:73910‑M2/1‑121 (MQ=255)
                                     tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAAc                                                                                                              >  5:5263‑M2/109‑148 (MQ=255)
                                               actgtcggcgaaggtaagtagatgactcatgaggatccctgttctatggctccagatgacaaacatgttctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGaa                                                                                                    <  5:122115‑M2/50‑1 (MQ=255)
                                                aataatGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt                                                                                                  <  3:141530‑M2/149‑49 (MQ=255)
                                                     tGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt                                                                                             >  2:11234‑M2/1‑96 (MQ=255)
                                                         aTCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct                                                                                          >  3:82867‑M2/1‑92 (MQ=255)
                                                          tCCATTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAATAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc                                                                                        >  5:106643‑M2/1‑91 (MQ=255)
                                                                 ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTa                                                                                 <  5:130429‑M2/69‑1 (MQ=255)
                                                                        aCATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgat                                                                          <  2:155309‑M2/149‑73 (MQ=255)
                                                                           atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                                                                  <  3:49209‑M2/4‑1 (MQ=255)
                                                                           atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAg                                                                                                                                                  >  4:49209‑M2/71‑74 (MQ=255)
                                                                            tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCa                                                                      <  6:5263‑M2/80‑1 (MQ=255)
                                                                                 aCATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc                                                                  >  1:155309‑M2/1‑68 (MQ=255)
                                                                                  cATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc                                                                >  4:141530‑M2/1‑67 (MQ=255)
                                                                                    tCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc                                                                                                <  1:148449‑M2/115‑51 (MQ=255)
                                                                                    tCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttc                                                                                                >  2:148449‑M2/1‑65 (MQ=255)
                                                                                    cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAgg                                                                          >  3:7400‑M2/62‑137 (MQ=255)
                                                                                    cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATCCAgg                                                                          <  4:7400‑M2/76‑1 (MQ=255)
                                                                                      tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTaa                                                                                                                          >  2:69880‑M2/60‑87 (MQ=255)
                                                                                      tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTaa                                                                                                                          <  1:69880‑M2/28‑1 (MQ=255)
                                                                                      tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTaaa                                                                                               >  1:81721‑M2/60‑114 (MQ=255)
                                                                                      tgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTaaa                                                                                               <  2:81721‑M2/55‑1 (MQ=255)
                                                                                                ctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCtt                                                  >  6:54184‑M2/50‑149 (MQ=255)
                                                                                                   cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCtttt                                                <  5:54184‑M2/102‑1 (MQ=255)
                                                                                                   cagatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTc                                               >  6:171067‑M2/47‑149 (MQ=255)
                                                                                                     gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCtt                                             >  1:151378‑M2/45‑149 (MQ=255)
                                                                                                     gatgacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCtt                                             <  2:151378‑M2/105‑1 (MQ=255)
                                                                                                     ataAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                          >  7:18741‑M2/1‑48 (MQ=255)
                                                                                                     ataAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                          <  8:18741‑M2/136‑89 (MQ=255)
                                                                                                        gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCtt                                             <  7:45538‑M2/105‑1 (MQ=255)
                                                                                                        gacaaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCtt                                             >  8:45538‑M2/42‑146 (MQ=255)
                                                                                                         aCATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt                                                                                    <  1:172419‑M2/106‑63 (MQ=255)
                                                                                                         aCATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgt                                                                                    >  2:172419‑M2/1‑44 (MQ=255)
                                                                                                           aaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTg                                                             <  2:20783‑M2/89‑1 (MQ=255)
                                                                                                           aaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTg                                                             >  1:20783‑M2/39‑127 (MQ=255)
                                                                                                           aaacatgatctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTg                                       >  1:119545‑M2/39‑149 (MQ=255)
                                                                                                              aTCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                  >  3:149300‑M2/1‑39 (MQ=255)
                                                                                                              aTCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgttt                                                                                  <  4:149300‑M2/103‑65 (MQ=255)
                                                                                                                 tttACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaatacgcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt                                        >  7:110211‑M2/1‑36 (MQ=255)
                                                                                                                 tttACTCATAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatt                                        <  8:110211‑M2/142‑107 (MQ=255)
                                                                                                                  atctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGt                                                                                             <  8:104465‑M2/57‑1 (MQ=255)
                                                                                                                  atctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGt                                                                                             >  7:104465‑M2/32‑88 (MQ=255)
                                                                                                                   tctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACt                                                                                          <  8:140698‑M2/60‑1 (MQ=255)
                                                                                                                   tctcatatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACt                                                                                          >  7:140698‑M2/31‑90 (MQ=255)
                                                                                                                       atatcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCtt                           <  5:171067‑M2/123‑1 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagctgggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccagtaaatgccttgaatca                                               >  8:12650‑M2/1‑29 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                               <  5:48467‑M2/128‑100 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                               <  7:12650‑M2/128‑100 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                               >  6:48467‑M2/1‑29 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagccatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccg                                 >  3:36835‑M2/1‑29 (MQ=255)
                                                                                                                        aTAAGAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagccatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccg                                 <  4:36835‑M2/142‑114 (MQ=255)
                                                                                                                         atcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCt                                                              >  5:39618‑M2/25‑112 (MQ=255)
                                                                                                                         atcagggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCt                                                              <  6:39618‑M2/88‑1 (MQ=255)
                                                                                                                            gAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                          >  3:96569‑M2/1‑25 (MQ=255)
                                                                                                                            gAATAGACAACGCTTTTTCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat                                                          <  4:96569‑M2/113‑89 (MQ=255)
                                                                                                                             gggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGa                                                           <  4:44605‑M2/91‑1 (MQ=255)
                                                                                                                              ggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaacaa                     <  5:135990‑M2/129‑1 (MQ=255)
                                                                                                                              ggacttgttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTaacaa                     >  6:135990‑M2/20‑148 (MQ=255)
                                                                                                                                     ttcgcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAgcagca             >  4:48874‑M2/13‑149 (MQ=255)
                                                                                                                                        gcaccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAAcc          >  7:136433‑M2/10‑149 (MQ=255)
                                                                                                                                         tttttCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcct                                                      <  6:147722‑M2/104‑93 (MQ=255)
                                                                                                                                         caccttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCg         >  4:54465‑M2/9‑149 (MQ=255)
                                                                                                                                          accttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGc        >  5:61443‑M2/8‑149 (MQ=255)
                                                                                                                                            cttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAg                                                                                   <  6:31306‑M2/67‑1 (MQ=255)
                                                                                                                                            cttccTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAg                                                                                   >  5:31306‑M2/6‑72 (MQ=255)
                                                                                                                                             tCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggc              <  6:118328‑M2/140‑133 (MQ=255)
                                                                                                                                             tCTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggc              >  5:118328‑M2/1‑8 (MQ=255)
                                                                                                                                              cTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga                                                   <  1:18896‑M2/102‑96 (MQ=255)
                                                                                                                                              cTGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttga                                                   >  2:18896‑M2/1‑7 (MQ=255)
                                                                                                                                               tGTTAGggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccag   <  1:50536‑M2/149‑144 (MQ=255)
                                                                                                                                                cTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGa                                                           <  8:69575‑M2/91‑1 (MQ=255)
                                                                                                                                                cTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGa                                                           >  7:69575‑M2/2‑92 (MQ=255)
                                                                                                                                                cTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCAtt  <  8:136433‑M2/148‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                
TTTAATTCACTTTTAATTGTATAAATTGTATTGTACTCACGAGGCAAAAATAATGTCATCCCTTTCAGTAAGACATTCATAACATCCTGATCAGGGTATTTATAAACATTATCTTTACTCATAAGAATAGACAACGCTTTTTCTGTTAGTTTTGCGTCAGCCCATTTTTTTAAGTCTAAATAAACGACACCGGAATTAAAGTACTGCCCAAGTAATTCAGGATCAGACAACCTGGATACCGCCTTTTCTTGCATTGGCTCAACATCTTTAACAACAGCAGCAACCGCTCCATT  >  NC_000913/3801266‑3801558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.