New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3780085	33 (1.140)	4 (0.150)	4/234	3.2	13.2%	coding (259/1191 nt)	lldD	L‑lactate dehydrogenase, FMN‑linked
	?	NC_000913	= 3780114	22 (0.820)					coding (288/1191 nt)	lldD	L‑lactate dehydrogenase, FMN‑linked
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GATTTGTCAGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTGAAGAAGTCGCGCCAGCCATCAAGCGCCCAATGTGGTTCCAGCTTT  >  NC_000913/3779947‑3780211                                                                                                                                           |                                                                                                                               gATTTGTCAGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGCCGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGt                                                                                                                      <  2:141571/149‑1 (MQ=255)       tCAGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAgg                                                                                                                 <  1:42482/148‑1 (MQ=255)         aGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCa                                                                                                                   >  1:109350/1‑144 (MQ=255)         aGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCa                                                                                                                   <  2:109350/144‑1 (MQ=255)           aaGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGc                                                                                                             >  1:96840/1‑148 (MQ=255)                 cgcTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAgcg                                                                                                      >  2:121292/1‑149 (MQ=255)                       gcCAGCGTATTCTGAAAAACATTTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGAGGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGAc                                                                                                <  8:101051/149‑1 (MQ=255)                         cAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGAcgc                                                                                              <  1:121292/149‑1 (MQ=255)                                          cATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTa                                                                             <  2:96840/149‑1 (MQ=255)                                              tCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCAt                                                                                          >  1:96409/1‑132 (MQ=255)                                              tCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCAt                                                                                          <  2:96409/132‑1 (MQ=255)                                                cGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTAc                                                                            <  1:85637/144‑1 (MQ=255)                                                cGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTAc                                                                            >  2:85637/1‑144 (MQ=255)                                                      aaGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGaa                                                                                                                        >  5:55725/1‑94 (MQ=255)                                                      aaGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGaa                                                                                                                        <  6:55725/94‑1 (MQ=255)                                                      aaGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACg                                                                  <  8:11139/148‑1 (MQ=255)                                                      aaGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACg                                                                  >  7:11139/1‑148 (MQ=255)                                                           tGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTActc                                                                          <  2:143766/135‑1 (MQ=255)                                                           tGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTActc                                                                          >  1:143766/1‑135 (MQ=255)                                                           tGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTcc                                                            >  1:15933/1‑149 (MQ=255)                                                                           tAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaa                                             <  2:15933/148‑1 (MQ=255)                                                                              tGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaag                                            >  5:106362/1‑146 (MQ=255)                                                                              tGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaag                                            <  6:106362/146‑1 (MQ=255)                                                                                agaAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCAt                                                                                          >  5:37786/1‑98 (MQ=255)                                                                                agaAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCAt                                                                                          <  6:37786/98‑1 (MQ=255)                                                                                           aTGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaag                                            <  2:59554/133‑1 (MQ=255)                                                                                           aTGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaag                                            >  1:59554/1‑133 (MQ=255)                                                                                                      aCTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTcc                                                            >  3:123772/1‑106 (MQ=255)                                                                                                      aCTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTcc                                                            <  4:123772/106‑1 (MQ=255)                                                                                                      aCTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTGAAGAAGTCGCGCCAGCCATCAAGCGCCCaa                 >  1:71259/1‑149 (MQ=255)                                                                                                                     tttGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTGAAGAAGTCGCGCCAGCCATCAAGCGCCCAATGTGGTTCCAGCttt  <  2:71259/149‑1 (MQ=255)                                                                                                                                  tATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaa                                             >  5:22342/1‑93 (MQ=255)                                                                                                                                  tATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTgaa                                             <  6:22342/93‑1 (MQ=255)                                                                                                                                           |                                                                                                                               GATTTGTCAGAAGTGGCGCTGCGCCAGCGTATTCTGAAAAACATGTCCGACTTAAGCCTGGAAACGACGCTGTTTAATGAGAAATTGTCGATGCCGGTGGCACTGGCTCCGGTGGGTTTGTGTGGCATGTATGCGCGTCGTGGCGAAGTTCAGGCAGCCAAAGCGGCGGACGCGCATGGTATTCCGTTTACTCTCTCGACGGTTTCCGTTTGCCCGATTGAAGAAGTCGCGCCAGCCATCAAGCGCCCAATGTGGTTCCAGCTTT  >  NC_000913/3779947‑3780211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.