New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 378380531 (1.000)4 (0.140) 4/250 3.5 10.7% coding (324/468 nt) secB protein export chaperone
?NC_000913 = 3783825 38 (1.300)coding (304/468 nt) secB protein export chaperone
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAGTACCTTCGCCAGCCTGCTGCTGCAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCT  >  NC_000913/3783681‑3783973
                                                                                                                                                |                                                                                                                                                    
cAGTACCTTCGCCAGCCTGCTGCTGCAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTa                                                                                                                                                   <  3:84626/148‑1 (MQ=255)
      cTTCGCCAGCCTGCTGCTGCAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTccc                                                                                                                                            >  6:121881/1‑149 (MQ=255)
         cGCCAGCCTGCTGCTGCAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCa                                                                                                                                           <  2:125987/147‑1 (MQ=255)
                         cAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTggg                                                                                                                         >  6:85139/1‑149 (MQ=255)
                         cAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTgg                                                                                                                          <  4:45767/148‑1 (MQ=255)
                               gTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCt                                                                                                                    <  5:85139/148‑1 (MQ=255)
                                ttCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGt                                                                                                                        <  7:18803/143‑1 (MQ=255)
                                ttCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGt                                                                                                                        >  8:18803/1‑143 (MQ=255)
                                                     ttAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCcgc                                                                                                         <  3:129348/137‑1 (MQ=255)
                                                     ttAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCcgc                                                                                                         >  4:129348/1‑137 (MQ=255)
                                                                aaGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATAc                                                                                           <  2:97025/140‑1 (MQ=255)
                                                                aaGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATAc                                                                                           >  3:16799/1‑140 (MQ=255)
                                                                aaGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATAc                                                                                           >  1:97025/1‑140 (MQ=255)
                                                                aaGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATAc                                                                                           <  4:16799/140‑1 (MQ=255)
                                                                         ttGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTcac                                                                         <  5:121881/149‑1 (MQ=255)
                                                                             gggAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAg                                                                     >  4:37574/1‑149 (MQ=255)
                                                                                                ccATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAAcgcg                                                              <  3:55401/137‑1 (MQ=255)
                                                                                                ccATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAAcgcg                                                              >  4:55401/1‑137 (MQ=255)
                                                                                                 cATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGccc                                                  >  7:71773/1‑148 (MQ=255)
                                                                                                   tGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCaaa                                               <  8:71773/149‑1 (MQ=255)
                                                                                                     cTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCaaa                                               >  2:62960/1‑147 (MQ=255)
                                                                                                        gTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAagag                                            <  1:62960/147‑1 (MQ=255)
                                                                                                             gCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTa                                     >  2:24524/1‑149 (MQ=255)
                                                                                                               aCTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGc                                                                                        >  4:31371/1‑96 (MQ=255)
                                                                                                               aCTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGc                                                                                        <  3:31371/96‑1 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGa                                                                   <  5:114783/115‑1 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGa                                                                   >  6:114783/1‑115 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTttc                                                         <  4:9829/125‑1 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTttc                                                         >  3:9829/1‑125 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACgg                                  >  5:74980/1‑148 (MQ=255)
                                                                                                                 tCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACgg                                  >  5:81056/1‑148 (MQ=255)
                                                                                                                             gggAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAagag                                            >  7:39279/1‑126 (MQ=255)
                                                                                                                             gggAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTGCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAagag                                            <  8:39279/126‑1 (MQ=255)
                                                                                                                             gggAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGc                                          >  8:69358/1‑127 (MQ=255)
                                                                                                                                       tGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTaa                               >  4:123100/1‑129 (MQ=255)
                                                                                                                                       tGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTaa                               <  3:123100/129‑1 (MQ=255)
                                                                                                                                            gggCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTc               <  1:128120/140‑1 (MQ=255)
                                                                                                                                            gggCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTc               >  2:128120/1‑140 (MQ=255)
                                                                                                                                                aGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCt  <  3:37574/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
CAGTACCTTCGCCAGCCTGCTGCTGCAAATAGTTCATGAACAGCGCATCGAAGTTAACCGGCGCAAGGTTCAGTTGCGGGAATGTACCGCGGGATACCATGCTGGTGATGCACTCACGAGCATACGGGAACAGAATGTTCGGGCAGTATGCTCCCAGGCAATGCGCCATCTGGGTGCCTTCGATACCCGCGATGGAGAAAATACCGCCCTGCTGAACTTCACACAGGAACGCGGTTTCTTCGCCCAAAGAGGCCGTTACGGTAACACGCAGTACCACTTCGTATACGTCATCT  >  NC_000913/3783681‑3783973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.