Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,799,134 G→T 100% S60* (TCG→TAG)  waaU ← lipopolysaccharide core biosynthesis

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,799,1340GT100.0% 470.7 / NA 136S60* (TCG→TAG) waaUlipopolysaccharide core biosynthesis
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (81/55);  total (81/55)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

Only 100 of 136 total aligned reads displayed.

CATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAA  >  NC_000913/3798990‑3799277
                                                                                                                                                |                                                                                                                                               
cATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTaa                                                                                                                                               <  7:189455/147‑1 (MQ=255)
   agagTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACtt                                                                                                                                            >  4:266374/1‑147 (MQ=255)
        aaGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATAc                                                                                                                                       >  8:185284/1‑147 (MQ=255)
        aaGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATAc                                                                                                                                       >  2:284770/1‑147 (MQ=255)
        aaGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATAc                                                                                                                                       >  4:121958/1‑147 (MQ=255)
        aaGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATAc                                                                                                                                       >  8:151901/1‑147 (MQ=255)
        aaGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATAc                                                                                                                                       >  1:52885/1‑147 (MQ=255)
           cATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAAtt                                                                                                                                   <  2:11443/148‑1 (MQ=255)
            aTTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCACTTTACTATAAAGTTCACGATAAATCTAACTTAATACAAt                                                                                                                                    >  5:250684/1‑146 (MQ=255)
              ttCAAGAAACCCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAg                                                                                                                                 >  2:82091/1‑147 (MQ=255)
              ttCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTaa                                                                                                                                               >  5:136200/1‑133 (MQ=255)
              ttCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAAt                                                                                                                                    >  1:315259/1‑144 (MQ=255)
              ttCAAGAAAACCGGTTGATTCATTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCACCACCCTTTCTATTTGTGAGATGAGTTATTTTAACCCGTTTACTATAAAGTTCACGATAAATATAGCTTAATACAAt                                                                                                                                    >  6:148158/1‑144 (MQ=255)
               tCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAg                                                                                                                                 <  1:88263/146‑1 (MQ=255)
               tCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                <  4:1159/147‑1 (MQ=255)
               tCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                <  3:173548/147‑1 (MQ=255)
               tCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                <  2:53804/147‑1 (MQ=255)
               tCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                <  8:226652/147‑1 (MQ=255)
                 aaGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATc                                                                                                                              <  2:305913/147‑1 (MQ=255)
                   gAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCAc                                                                                                                            >  2:197389/1‑147 (MQ=255)
                      aaCCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAg                                                                                                                        <  3:299250/148‑1 (MQ=255)
                          ggTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTtta                                                                                                                    <  7:54673/148‑1 (MQ=255)
                            tttcttCTTTAATACAGAACTCAAATTTTTTTTTCTTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTttatt                                                                                                                  <  4:201042/144‑1 (MQ=255)
                            ttGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTttatt                                                                                                                  <  8:130753/148‑1 (MQ=255)
                               aTTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTttattat                                                                                                                <  7:151901/147‑1 (MQ=255)
                                 tCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                <  8:166968/129‑1 (MQ=255)
                                 tCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGa                                                                                                                                >  7:166968/1‑129 (MQ=255)
                                    ttAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCAt                                                                                                          >  7:26023/1‑148 (MQ=255)
                                     tAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAAc                                                                                                                                              >  5:231261/1‑111 (MQ=255)
                                     tAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAAc                                                                                                                                              <  6:231261/111‑1 (MQ=255)
                                       aTACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGa                                                                                                        <  3:132676/147‑1 (MQ=255)
                                         aCAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGaat                                                                                                      >  2:226070/1‑147 (MQ=255)
                                           aGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGaataat                                                                                                   <  4:204822/148‑1 (MQ=255)
                                            gAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAataata                                                                                                  <  3:266374/148‑1 (MQ=255)
                                            gAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAataata                                                                                                  <  5:119464/148‑1 (MQ=255)
                                            gAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAataata                                                                                                  <  4:64307/148‑1 (MQ=255)
                                            gAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAataata                                                                                                  <  1:226070/148‑1 (MQ=255)
                                             aaCTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGaataat                                                                                                   >  6:125214/1‑146 (MQ=255)
                                                  aaaTATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGc                                                                                              <  6:106569/146‑1 (MQ=255)
                                                         tttttATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTaa                                                                                     <  4:198630/148‑1 (MQ=255)
                                                         tttttATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTaa                                                                                     <  5:125214/148‑1 (MQ=255)
                                                           tttATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAAc                                                                                    <  3:101332/147‑1 (MQ=255)
                                                           tttATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAAc                                                                                    <  8:26023/147‑1 (MQ=255)
                                                                tattaGAGAGACATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACATTTAGATCCCCAAGTTTATTATTATAATGAATAATAAGGCATGATTTAACTtgtg                                                                               <  6:20976/147‑1 (MQ=255)
                                                                tattaGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGc                                                                              >  5:28986/1‑148 (MQ=255)
                                                                 attaGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCt                                                                             >  6:172052/1‑148 (MQ=255)
                                                                   taGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTtgtg                                                                               <  7:184804/144‑1 (MQ=255)
                                                                     gagagaAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGa                                                                          <  3:121958/147‑1 (MQ=255)
                                                                      agagaAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATc                                                                        >  1:27477/1‑148 (MQ=255)
                                                                              gccacACCCTTTCTATTTGTGAGAATAGTTAGTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATAACAAAGTTTATTATTATCATGAATAATAAGGCATGCTTTAACTTTGGCTTCATCTGTAAttt                                                                >  6:316398/5‑148 (MQ=255)
                                                                                     ccTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGTCATGATTTAACTTGTGCTGGATCTGTAATTTGattatt                                                         >  4:274442/1‑148 (MQ=255)
                                                                                     ccTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTaa                                                                                     <  2:278269/120‑1 (MQ=255)
                                                                                      cTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGattatt                                                         >  2:185507/1‑147 (MQ=255)
                                                                                        ttCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGAttatttat                                                      >  8:282877/1‑148 (MQ=255)
                                                                                         tCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATTAATAATAAGGCATGATTTATCTTGTGATGGATCTGTAATTTGATtatttatt                                                     >  5:168493/1‑148 (MQ=255)
                                                                                         tCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTtgtg                                                                               >  1:224467/1‑122 (MQ=255)
                                                                                         tCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTtgtg                                                                               <  2:224467/122‑1 (MQ=255)
                                                                                         tCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTg                                                               >  4:14694/1‑138 (MQ=255)
                                                                                         tCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATtatttatt                                                     >  3:240520/1‑148 (MQ=255)
                                                                                           tATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTAtttatttt                                                   <  3:274442/148‑1 (MQ=255)
                                                                                            aTTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTAtttatttta                                                  >  6:169892/1‑148 (MQ=255)
                                                                                             tttGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTAtttattttat                                                 >  6:149054/1‑148 (MQ=255)
                                                                                             tttGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTAtttatttt                                                   <  6:50593/146‑1 (MQ=255)
                                                                                             tttGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTAtttatttt                                                   <  1:284770/146‑1 (MQ=255)
                                                                                               tgtgAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATttattttatt                                                <  1:180593/147‑1 (MQ=255)
                                                                                               tgtgAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATttattttatt                                                <  1:197389/147‑1 (MQ=255)
                                                                                                   agaagaGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGa                                            >  5:185922/1‑147 (MQ=255)
                                                                                                               ttAACCCCTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAaaagaa                                <  2:52885/147‑1 (MQ=255)
                                                                                                                     ccTTTACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAAt                         <  4:240520/148‑1 (MQ=255)
                                                                                                                       tttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTtgt                                                                                <  5:96015/91‑1 (MQ=255)
                                                                                                                       tttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTtgt                                                                                >  6:96015/1‑91 (MQ=255)
                                                                                                                       tttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAAtt                        >  1:314709/1‑147 (MQ=255)
                                                                                                                       tttAATATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATTATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGaa                           <  3:41110/144‑1 (MQ=255)
                                                                                                                        ttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTaa                      >  4:161875/1‑148 (MQ=255)
                                                                                                                        ttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTaa                      >  3:190714/1‑148 (MQ=255)
                                                                                                                        ttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTaa                      >  4:49053/1‑148 (MQ=255)
                                                                                                                        ttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTaa                      >  7:292178/1‑148 (MQ=255)
                                                                                                                        ttACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTaa                      >  5:215982/1‑148 (MQ=255)
                                                                                                                        aaaCTATAAAGTACACGATAAATATAACTTAATACAATTAGATCACCAACTTTAATATAATAATCAATAATAAGGCATGAATAAACTTGTCCTGTATCAGTAATTTGATTATTTATTTTATTACGAAATAAAAAAAAAATGaaa                          >  4:41110/3‑144 (MQ=255)
                                                                                                                         tACTATAAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTa                       <  1:185507/146‑1 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  6:165403/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  2:3583/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  8:161063/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  4:139274/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  4:211094/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  7:254090/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  6:146031/1‑147 (MQ=255)
                                                                                                                             ataAAGTTCACGATAAATCTAACTGAATACAATTAGATCATCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCtt                  >  2:239688/1‑147 (MQ=255)
                                                                                                                              taAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAaaaga                                 >  8:227258/1‑131 (MQ=255)
                                                                                                                              taAAGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGa                >  8:33744/1‑148 (MQ=255)
                                                                                                                                aaGTTCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGAtt              <  5:172052/148‑1 (MQ=255)
                                                                                                                                    tCACGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGt          >  2:75730/1‑148 (MQ=255)
                                                                                                                                      aCGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGtt         >  3:53855/1‑147 (MQ=255)
                                                                                                                                       cGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAaaagaa                                <  4:160016/123‑1 (MQ=255)
                                                                                                                                       cGATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAaaagaa                                >  3:160016/1‑123 (MQ=255)
                                                                                                                                        gATAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTta       >  8:273403/1‑147 (MQ=255)
                                                                                                                                         aTAAATCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTtata     >  8:301628/1‑148 (MQ=255)
                                                                                                                                             aTCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATaa  >  5:220320/1‑147 (MQ=255)
                                                                                                                                             aTCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATaa  >  7:226219/1‑147 (MQ=255)
                                                                                                                                             aTCTAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATaa  >  7:144303/1‑147 (MQ=255)
                                                                                                                                                |                                                                                                                                               
CATAGAGTAAGCATTTCAAGAAAACCGGTTGATTCTTTAATACAGAACTCAAATATATTTTTATTATTAGAGAGAAATTCCCCACCCTTTCTATTTGTGAGAAGAGTTATTTTAACCCCTTTACTATAAAGTTCACGATAAATCGAACTTAATACAATTAGATCACCAAGTTTATTATTATCATGAATAATAAGGCATGATTTAACTTGTGCTGGATCTGTAATTTGATTATTTATTTTATTACGAAATAAAAAAGAAAGGAAATTAATCTTGATTTTGTTTATATAA  >  NC_000913/3798990‑3799277

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: