mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4422946 | 107 (1.540) | 4 (0.060) | 4/244 | NT | 3.8% | coding (101/855 nt) | ulaE | L‑xylulose 5‑phosphate 3‑epimerase |
| ? | NC_000913 | = 4422951 | 102 (1.530) | coding (106/855 nt) | ulaE | L‑xylulose 5‑phosphate 3‑epimerase | |||||
| * | ? | NC_000913 | 4235570 = | 96 (1.390) | 3 (0.050) | 3/236 | NT | 3.1% | intergenic (+163/‑336) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913 | 4235593 = | 99 (1.540) | intergenic (+186/‑313) | pgi/yjbE | glucosephosphate isomerase/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913 | 4146511 = | 106 (1.530) | 4 (0.060) | 4/250 | NT | 3.8% | coding (254/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme |
| ? | NC_000913 | 4146530 = | 96 (1.410) | coding (273/879 nt) | pflC | putative [formate‑C‑acetyltransferase 2]‑activating enzyme; pyruvate formate‑lyase 1‑activating enzyme | |||||
| * | ? | NC_000913 | 4122751 = | 118 (1.700) | 4 (0.060) | 4/244 | NT | 3.4% | coding (589/960 nt) | ftsN | essential cell division protein |
| ? | NC_000913 | 4122765 = | 113 (1.700) | coding (575/960 nt) | ftsN | essential cell division protein | |||||
| * | ? | NC_000913 | = 4103506 | 87 (1.460) | 4 (0.070) | 4/216 | NT | 4.4% | intergenic (+10/+96) | yiiM/cpxA | 6‑N‑hydroxylaminopurine resistance protein/sensory histidine kinase in two‑component regulatory system with CpxR |
| ? | NC_000913 | 4229376 = | NA (NA) | noncoding (1/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | = 4053536 | 84 (1.210) | 4 (0.060) | 4/248 | NT | 4.8% | noncoding (7/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 4053542 | 77 (1.140) | noncoding (13/84 nt) | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP294 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913 | 3724450 = | 102 (1.470) | 3 (0.040) | 3/254 | NT | 2.9% | coding (869/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit |
| ? | NC_000913 | 3724450 = | 102 (1.470) | coding (869/912 nt) | glyQ | glycine tRNA synthetase, alpha subunit | |||||
| * | ? | NC_000913 | = 2865415 | 80 (1.150) | 4 (0.060) | 4/244 | NT | 4.9% | coding (315/1365 nt) | ygbN | putative transporter |
| ? | NC_000913 | = 2865422 | 79 (1.190) | coding (322/1365 nt) | ygbN | putative transporter | |||||
| * | ? | NC_000913 | = 341335 | 75 (1.080) | 3 (0.050) | 3/244 | NT | 3.8% | coding (211/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase |
| ? | NC_000913 | = 341358 | 79 (1.190) | coding (234/1383 nt) | yahJ | putative metallo‑dependent hydrolase domain deaminase | |||||