New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 283320	77 (0.970)	4 (0.050)	4/246	NT	4.6%	coding (120/1968 nt)	yagF	CP4‑6 prophage; dehydratase family protein
	?	NC_000913	= 283357	93 (1.240)					coding (157/1968 nt)	yagF	CP4‑6 prophage; dehydratase family protein
Rejected: Frequency below/above cutoff threshold.

AACAGCTCAAGCTTTGCTGAGCCGGACGATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/283167‑283320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccagcCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGATCACCGCATAAAACGCGTCGTCCTGCGGGGTGAAAATTTTCT  <  NC_000913/283357‑283211                                                                                                                                                                                                                                                                                                               AACAGCTCAAGCTTTGCTGCGCCGGACGATACCGATGCCCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGCCCCCGCAGCTGCTGCTGGAATCTC                                                                                                                                                          >  1:228187/1‑149    AGCTCAAGCTTTGCTGAGCCGGACGATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCA                                                                                                                                                       <  1:31541/149‑1    AGCTCAAGCTTTGCTGAGCCGGACGATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCC                                                                                                                                                         >  6:302147/1‑147                              TAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCCCATCCCGGCGTTCTGCGTCATGC                                                                                                                             >  3:117198/1‑149                                          TTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGC                                                                                                                                                     >  3:178645/1‑113                                          TTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGC                                                                                                                                                     <  4:178645/113‑1                                            GAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCG                                                                                                               >  4:130756/1‑149                                                  ATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGA                                                                                                         <  3:130756/149‑1                                                   TTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAG                                                                                                        <  4:117198/149‑1                                                                                                                                                     CCCAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGATCACCGCATAAAACGCGTCGTCCTGCGGGGTGAAAATT      >  2:305005/1‑149                                                                                                                                                       CAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGATCACCGCATAAAACGCGTCGTCCTGCGGGGTGAAAATTTT    <  4:146982/149‑1                                                                                                                                                       CAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGAT                                           <  3:96251/110‑1                                                                                                                                                       CAGCCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGAT                                           >  4:96251/1‑110                                                                                                                                                          CCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGATCACCGCATAAAACGCGTCGTCCTGCGGGGTGAAAATTTTCT  >  6:189059/1‑148                                                                                                                                                                                                                                                                                                               AACAGCTCAAGCTTTGCTGAGCCGGACGATAACGATGACCATTGAGAAAATTTTCACCCCGCAGGACGACGCGTTTTATGCGGTGATCACCCACGCGGCGGGGCCGCAGGGCGCTCTGCCGCTGACCCCGCAGATGCTGATGGAATCTCCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/283167‑283320 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcccagcCCATCCCGGCGTTCTGCGTCATGCCGAACAGGTTGCCGCTGGGAGATTCCATCAGCATCTGCGGGGTCAGCGGCAGAGCGCCCTGCGGCCCCGCCGCGTGGGTGATCACCGCATAAAACGCGTCGTCCTGCGGGGTGAAAATTTTCT  <  NC_000913/283357‑283211

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.