Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,335,153 Δ593 bp [ymiA]yciX [ymiA], yciX

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1335153 1335745 593 53 [0] [0] 51 [ymiA]–yciX [ymiA],yciX

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13351520 (0.000)51 (0.570) 45/282 0.9 100% coding (29/165 nt) ymiA uncharacterized protein
?NC_000913 1335746 = 0 (0.000)intergenic (+288/‑85) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A

CTGGATGGGCGCGTTTTCTCTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCA  >  NC_000913/1335601‑1335892
                                                                                                                                                 |                                                                                                                                                  
aggtcaaaagattgaattattcactggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAAt                                                                                                                                                 >  5:336896‑M2/146‑149 (MQ=255)
            tgaattattcactggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagagatggcgattatatgagAAATCGTTACGCGATg                                                                                                                                     >  8:37391‑M2/134‑149 (MQ=255)
                  attcactggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTtgt                                                                                                                                <  5:248638‑M2/21‑1 (MQ=255)
                   ttcactggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTtgtg                                                                                                                               <  5:210493‑M2/22‑1 (MQ=255)
                      actggagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAGTCGTTGCGGGAGGgttgtgtgtg                                                                                                                           >  6:265069‑M2/124‑146 (MQ=255)
                          gagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatttgagAAATCGTTACGCGATGTTTGTGTTATCtt                                                                                                                        >  4:214791‑M2/120‑148 (MQ=255)
                          gagacgattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCtt                                                                                                                        <  6:336896‑M2/29‑1 (MQ=255)
                            gacgattcgtaaactcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTaa                                                                                                                     <  7:198610‑M2/32‑1 (MQ=255)
                               gattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAatat                                                                                                                  >  5:146695‑M2/115‑149 (MQ=255)
                               gattcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAatat                                                                                                                  >  8:37557‑M2/115‑149 (MQ=255)
                                  tcgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCa                                                                                                               >  8:348519‑M2/112‑149 (MQ=255)
                                   cgtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCa                                                                                                               <  1:382336‑M2/38‑1 (MQ=255)
                                    gtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGt                                                                                                                                    <  3:222525‑M2/17‑1 (MQ=255)
                                    gtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGt                                                                                                                                    >  4:222525‑M2/110‑126 (MQ=255)
                                    gtaaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCAcc                                                                                                             >  8:195189‑M2/110‑149 (MQ=255)
                                      aaattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCt                                                                                                           >  5:297039‑M2/108‑149 (MQ=255)
                                       aattcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCt                                                                                                           <  7:195189‑M2/42‑1 (MQ=255)
                                        attcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGa                                                                                                         <  5:265069‑M2/44‑1 (MQ=255)
                                         ttcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGaa                                                                                                        <  7:348519‑M2/45‑1 (MQ=255)
                                         ttcgctggatttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGaa                                                                                                        <  5:298906‑M2/45‑1 (MQ=255)
                                                  tttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacttcttgctgataagtgatggcgattatatgtgAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAg                                                                                               <  5:130243‑M2/54‑1 (MQ=255)
                                                  tttttgactaaagtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAg                                                                                               <  7:127414‑M2/54‑1 (MQ=255)
                                                             agtttctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAc                                                                                    <  6:297039‑M2/65‑1 (MQ=255)
                                                                 tctttaggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCt                                                                                 <  1:320964‑M2/68‑1 (MQ=255)
                                                                     taggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGt                                                                               <  8:247223‑M2/70‑1 (MQ=255)
                                                                     taggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCa                                                                             <  6:146695‑M2/72‑1 (MQ=255)
                                                                      aggatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTTATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCAt                                                                            >  2:309340‑M2/76‑148 (MQ=255)
                                                                        gatttgtctcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGAGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCAtt                                                                           >  1:105894‑M2/74‑147 (MQ=255)
                                                                                tcatcgtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGc                                                                 >  7:174695‑M2/66‑149 (MQ=255)
                                                                                     gtatgattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgt                                                            >  4:57676‑M2/61‑149 (MQ=255)
                                                                                         gattaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgt                                                         >  4:88163‑M2/57‑148 (MQ=255)
                                                                                           ttaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtc                                                           <  1:321407‑M2/90‑1 (MQ=255)
                                                                                           ttaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtc                                                           >  2:321407‑M2/55‑144 (MQ=255)
                                                                                           ttaattacaccaatcgttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCaa                                                      >  2:14051‑M2/55‑149 (MQ=255)
                                                                                                      aatcgttcaacgtcttgctgatatgtgatggcgattatatgagATATCGTTTCGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCAGTCATTAAGGAGGAGCTATGTCGTCAACCCTACgag                                             <  8:101530‑M2/104‑1 (MQ=255)
                                                                                                      aatcgttcaacctcttgctgataagtgatggcgattatatgagAAATCGTTACGCGAAGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGTAGCTATGTCGTCAACCCTACgag                                             >  7:101530‑M2/44‑147 (MQ=255)
                                                                                                           ttcaacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTa                                                               <  2:193723‑M2/86‑1 (MQ=255)
                                                                                                              aacgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGt                                     >  2:133490‑M2/36‑147 (MQ=255)
                                                                                                               acgtcttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAg                                  <  1:133490‑M2/115‑1 (MQ=255)
                                                                                                                    ttgctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTACACCATACGAGAAGCCAGTAAGGacac                             >  4:325445‑M2/30‑149 (MQ=255)
                                                                                                                      gctgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGt                           >  1:147597‑M2/28‑149 (MQ=255)
                                                                                                                        tgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTg                         >  6:170717‑M2/26‑149 (MQ=255)
                                                                                                                        tgataagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTg                         >  2:308652‑M2/26‑149 (MQ=255)
                                                                                                                          ataagtgatggagattatatgatAAATCGTTACGCGATGTTTGTTTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTg                         <  2:105894‑M2/124‑1 (MQ=255)
                                                                                                                           taagtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAg                      <  7:37557‑M2/127‑1 (MQ=255)
                                                                                                                             agtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGc                    <  3:88163‑M2/129‑1 (MQ=255)
                                                                                                                             agtgatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGc                    >  4:75328‑M2/21‑149 (MQ=255)
                                                                                                                                gatggcgattatatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCa                  <  1:309340‑M2/131‑1 (MQ=255)
                                                                                                                                           tatgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACt       <  1:308652‑M2/142‑1 (MQ=255)
                                                                                                                                            atgagAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTa     >  1:344488‑M2/6‑149 (MQ=255)
                                                                                                                                               agAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTAGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGCTAAAACTtcccc  >  4:57735‑M2/3‑148 (MQ=255)
                                                                                                                                                 |                                                                                                                                                  
CTGGATGGGCGCGTTTTCTCTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTACCA  >  NC_000913/1335601‑1335892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: