Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,335,035 Δ726 bp ymiAyciX ymiA, yciX

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1335035 1335760 726 32 [0] [0] 31 ymiA–yciX ymiA,yciX

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13350340 (0.000)31 (0.930) 25/260 0.5 100% intergenic (+205/‑90) cysB/ymiA N‑acetylserine‑responsive cysteine regulon transcriptional activator; autorepressor/uncharacterized protein
?NC_000913 1335761 = 0 (0.000)intergenic (+303/‑70) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A

TTGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTG  >  NC_000913/1334888‑1335169
                                                                                                                                                  |                                                                                                                                       
ttGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTgg                                                                                                                                         <  1:156796/147‑1 (MQ=255)
      cTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtg                                                                                                                                  <  2:71927‑M1/148‑8 (MQ=255)
                   cGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatatt                                                                                                                    >  6:148060‑M1/1‑128 (MQ=255)
                      gCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcac                                                                                                                 >  1:46557‑M1/1‑125 (MQ=255)
                          aaTATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcacact                                                                                                              >  6:20891‑M1/1‑121 (MQ=255)
                                                     gTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgt                                                                                  >  2:77134‑M1/1‑94 (MQ=255)
                                                                gTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaa                                                                                                                        <  7:104948‑M1/100‑18 (MQ=255)
                                                                           tCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgt                                                            >  3:69877‑M1/1‑72 (MQ=255)
                                                                               aTTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcatta                                                                             <  4:65121‑M1/128‑61 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                                   <  1:77134‑M1/149‑87 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                                   >  7:96389‑M1/1‑63 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                                   <  1:74773‑M1/149‑87 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                                   >  2:74773‑M1/1‑63 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctac                                                   >  4:46056‑M1/1‑63 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctga                                                                                                            <  3:55429‑M1/92‑30 (MQ=255)
                                                                                    ccGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctga                                                                                                            >  4:55429‑M1/1‑63 (MQ=255)
                                                                                     cGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacg                                                  <  4:69877‑M1/149‑88 (MQ=255)
                                                                                           gCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagc                                            <  8:96389‑M1/149‑94 (MQ=255)
                                                                                           gCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaa                                              <  5:148060‑M1/147‑92 (MQ=255)
                                                                                            cAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagcc                                           <  2:46557‑M1/149‑95 (MQ=255)
                                                                                                 tCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccct                                                     >  5:86076‑M1/1‑50 (MQ=255)
                                                                                                 tCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccct                                                     <  6:86076‑M1/134‑85 (MQ=255)
                                                                                                         tCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaag                                                                           >  6:106545‑M1/1‑42 (MQ=255)
                                                                                                         tCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaag                                                                           <  5:106545‑M1/104‑63 (MQ=255)
                                                                                                                          gTCAAAAGATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatgagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataa              >  7:122460‑M1/1‑25 (MQ=255)
                                                                                                                                 gATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaa            <  7:111434‑M1/143‑126 (MQ=255)
                                                                                                                                 gATTGAATTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaa            >  8:111434‑M1/1‑18 (MQ=255)
                                                                                                                                      aaTTATTCACTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaacttaccacta  <  5:20891‑M1/148‑136 (MQ=255)
                                                                                                                                              aCTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaa            >  7:32166‑M1/1‑5 (MQ=255)
                                                                                                                                              aCTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtc                                                           <  2:98392‑M1/83‑79 (MQ=255)
                                                                                                                                              aCTGGgtttgtgttatctttaatattcaccctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtc                                                           >  1:98392‑M1/1‑5 (MQ=255)
                                                                                                                                              aCTGGgtttgtgttatctttaatattcaacctgaagagaatcagggcttcgcaaccctgtcattaaggaggagctatgtcgtcaaccctacgagaagccagtaaggacacgttgcaggccaaagataaaa            <  8:32166‑M1/130‑126 (MQ=255)
                                                                                                                                                  |                                                                                                                                       
TTGTTACTTATTTCTATACCGTGCACAATATTTTTATCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAACTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTATGATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTG  >  NC_000913/1334888‑1335169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.