New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 601044	56 (0.620)	3 (0.040)	3/226	NT	5.2%	coding (2331/3144 nt)	cusA	copper/silver efflux system, membrane component
	?	NC_000913	= 601061	57 (0.680)					coding (2348/3144 nt)	cusA	copper/silver efflux system, membrane component

TATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATC  >  NC_000913/600924‑601204                                                                                                                                          |                                                                                                                                                tATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTg                                                                                                                                       <  2:379790/148‑1 (MQ=255)                     aGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATg                                                                                                                     >  7:185071/1‑146 (MQ=255)                          tttgtGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGTAAGGGATTGCCCGTTATACAATTAATCTGAGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGAagcag                                                                                                               >  2:326935/1‑147 (MQ=255)                              tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                               <  2:60588/143‑1 (MQ=255)                              tgACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAagcag                                                                                                               >  1:60588/1‑143 (MQ=255)                                aCTTCTGCGGTGGGCGGGGCGATGGTTGGCGAATCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCAGT‑GCCTGCGGACTATcgcgccagctttgcggataacgcagattaattggataacgg                                                                                                        >  4:46167‑M2/1‑106 (MQ=255)                                 cTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAc                                                                                                       <  7:213982/148‑1 (MQ=255)                                      gCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCAGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTgg                                                                                                  >  4:321738/1‑148 (MQ=255)                                       cGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTg                                                                                                   <  7:215275/146‑1 (MQ=255)                                                gggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCATGCCGCCGATGAAGCAGCAAATCACCCTGGCCGCCGTGGc                                                                                        >  4:254659/1‑148 (MQ=255)                                                 ggcgATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGcc                                                                                       <  3:321738/148‑1 (MQ=255)                                                        gTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACAtt                                                                                 >  1:106747/1‑147 (MQ=255)                                                         ttGGCGTAACGGTTGAAGGGATTGCCCGTTTTCCAATTAATCTGCGTTTTCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  8:185071/148‑1 (MQ=255)                                                         ttGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  2:106747/148‑1 (MQ=255)                                                         tgggggAATCGGTGTTAGGGATTGCCCTTTATCCAATTAATCTTCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGAGCCTGACGCCGATGTAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  5:303284/143‑1 (MQ=255)                                                               aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                                              >  5:398513/1‑95 (MQ=255)                                                               aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTg                                                                                                                              <  6:398513/95‑1 (MQ=255)                                                               aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                                      >  2:370477/1‑119 (MQ=255)                                                               aaaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCAcc                                                                                                      <  1:370477/119‑1 (MQ=255)                                                                aaCGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTctct                                                                        <  2:247946/148‑1 (MQ=255)                                                                                 cccGTTATACAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCGGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGGCGATGCt                                                       <  1:326935/148‑1 (MQ=255)                                                                                  ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               <  8:280447/123‑1 (MQ=255)                                                                                  ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTaa                                                                               >  7:280447/1‑123 (MQ=255)                                                                                  ccGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCt                                                       >  1:142116/1‑147 (MQ=255)                                                                                   cGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCCGGCACTGCGCCAGCTGCCGATCCTGCCGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTg                                                      >  1:81031/1‑147 (MQ=255)                                                                                     ttATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCGGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGaa                                                    >  7:237533/1‑147 (MQ=255)                                                                                      tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                                        <  2:315055/78‑1 (MQ=255)                                                                                      tATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCg                                                                                                                        >  1:315055/1‑78 (MQ=255)                                                                                       aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                                   >  8:209072/1‑114 (MQ=255)                                                                                       aTCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACa                                                                                   <  7:209072/114‑1 (MQ=255)                                                                                         ccAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAAcc                                                >  7:224493/1‑147 (MQ=255)                                                                                           aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                                       <  2:387670/122‑1 (MQ=255)                                                                                           aaTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTa                                                                       >  1:387670/1‑122 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                                             <  4:211342/83‑1 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAgcagca                                                                                                             >  3:211342/1‑83 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                               >  8:370613/1‑97 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAg                                                                                               <  7:370613/97‑1 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  2:211043/1‑147 (MQ=255)                                                                                            aTTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  2:124621/1‑147 (MQ=255)                                                                                             ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            >  4:369863/1‑147 (MQ=255)                                                                                             ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            <  6:191190/147‑1 (MQ=255)                                                                                             ttAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgaga                                            >  5:191190/1‑147 (MQ=255)                                                                                              tAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAAt                                          >  3:20333/1‑148 (MQ=255)                                                                                                  cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                                      >  3:117749/1‑148 (MQ=255)                                                                                                  cTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgc                                      >  4:66974/1‑148 (MQ=255)                                                                                                    gCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                                    >  1:373278/1‑148 (MQ=255)                                                                                                     cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATgcgcgc                                    <  1:124621/147‑1 (MQ=255)                                                                                                     cGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGcc                                   >  1:106998/1‑148 (MQ=255)                                                                                                        tATCCGCAAAGCTGGCGCGATAGTCCGCAGGCCCTGCGCCAGCTGCCGCTCCTGCCGCCGATGAAGCAGCAAGTCACCCGGGCAGCCGGGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAACACCGAGAATGCGCGCCcgc                                >  1:320947/1‑147 (MQ=255)                                                                                                          tCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCcgac                               <  3:133338/147‑1 (MQ=255)                                                                                                           ccGCAAATCTGTCTCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattggataacgggcaatcccttccaccgtttcgccaaccatcgccccgcccaccgcagaagtcacaaacaactg                                           >  3:148088‑M2/1‑32 (MQ=255)                                                                                                            cGCAAAGCTGGCGCGATAGTCCGCAGGCACTgcgccagctttgcggataacgcagattaattgtataactggcaatcgcttccaaagtttcgccaaccatcgccccgcccaccgcagaagtcacaatcaactgc                                          <  4:148088‑M2/134‑104 (MQ=255)                                                                                                              cAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCt                          <  4:20333/148‑1 (MQ=255)                                                                                                                  gCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGAt                      <  2:142116/148‑1 (MQ=255)                                                                                                                       cgcgATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTtata                 >  1:201967/1‑148 (MQ=255)                                                                                                                          gATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCg              <  3:254659/148‑1 (MQ=255)                                                                                                                           aTAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             >  4:306229/1‑116 (MQ=255)                                                                                                                           aTAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCgag                                             <  3:306229/116‑1 (MQ=255)                                                                                                                            tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCg                                               >  4:308116/1‑113 (MQ=255)                                                                                                                            tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCg                                               <  3:308116/113‑1 (MQ=255)                                                                                                                            tAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGAt            >  7:251743/1‑148 (MQ=255)                                                                                                                                      gCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGCCGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATc  <  2:373278/148‑1 (MQ=255)                                                                                                                                          tGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCg                                                            >  6:110810/1‑86 (MQ=255)                                                                                                                                          tGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCg                                                            <  5:110810/86‑1 (MQ=255)                                                                                                                                          |                                                                                                                                                TATGACGGTGGCGGATGTGCAGTTGTTTGTGACTTCTGCGGTGGGCGGGGCGATGGTTGGCGAAACGGTGGAAGGGATTGCCCGTTATCCAATTAATCTGCGTTATCCGCAAAGCTGGCGCGATAGTCCGCAGGCACTGCGCCAGCTGCCGATCCTGACGCCGATGAAGCAGCAAATCACCCTGGCAGACGTGGCCGACATTAAAGTCTCTACCGGACCGTCGATGCTGAAAACCGAGAATGCGCGCCCGACGAGCTGGATTTATATCGATGCCCGCGATC  >  NC_000913/600924‑601204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.