New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	138653 =	NA (NA)	7 (0.200)	9/244	2.3	NA	intergenic (+20/+182)	cueO/gcd	multicopper oxidase (laccase)/glucose dehydrogenase
	?	NC_000913	138675 =	NA (NA)					intergenic (+42/+160)	cueO/gcd	multicopper oxidase (laccase)/glucose dehydrogenase

ACGCCTTATCCAGCCTACAAAATTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGAGAGATCCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/138780‑138653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgggcatTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCATGAAC  >  NC_000913/138675‑138802                                                                                                                                                                                                                                                                  ACGCCTTATCCAGCCTACAAAATTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAA                                                                                                             <  3:133375/149‑1     CTTATCCAGCCTACAAAATTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCAT                                                                                                                                  >  5:3098/1‑124     CTTATCCAGCCTACAAAATTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCAT                                                                                                                                  <  6:3098/124‑1                       TTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAAT                                                                                                            >  3:19114/1‑128                       TTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAAT                                                                                                            <  4:19114/128‑1                                                            CTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAA                                                                                                                              <  7:61857/73‑1                                                                                 GCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAA                                                                <  3:16947/114‑1                                                                                 GCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGATCTCTCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAA                                                                >  4:16947/1‑114                                                                                                       TTTATTGCCCGGAGAGATCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAG                                                                                   <  8:61857/73‑1                                                                                                                        TCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGC                          >  5:106917/1‑113                                                                                                                        TCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGC                          <  6:106917/113‑1                                                                                                                        TCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGA                                                        >  5:81741/1‑83                                                                                                                        TCCGGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGA                                                        <  6:81741/83‑1                                                                                                                           GGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCATGAAC  >  5:11169/1‑134                                                                                                                           GGGCATTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCATGAAC  <  6:11169/134‑1                                                                                                                                TTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGG                                     <  1:166009/94‑1                                                                                                                                TTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGG                                     >  2:166009/1‑94                                                                                                                                                                                                                                                                  ACGCCTTATCCAGCCTACAAAATTGTGCAAAATCAATGGATTGCACAGCTAGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGATTTGCGTTTGTCATCAGTTTAATGCCCGGAGAGATCCGGGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/138780‑138653 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgggcatTAAACTGATGACAAACGCAAATCTGCCTGATGCGCTACGCTTATCAGGCCTACGCTAGCTGTGCAATCCATTGATTTTGCACAATTTTGTAGGCTGGATAAGGCGTTCACGCCGCATCCGGCATGAAC  >  NC_000913/138675‑138802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.