Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 1,335,370 Δ384 bp [yciX] [yciX]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1335370 1335753 384 48 [0] [0] 48 [yciX] [yciX]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 13353690 (0.000)48 (1.340) 44/256 0.0 100% coding (79/168 nt) yciX uncharacterized protein
?NC_000913 1335754 = 0 (0.000)intergenic (+296/‑77) yciX/acnA uncharacterized protein/aconitate hydratase 1; aconitase A

TTTTCTCTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAC  >  NC_000913/1335614‑1335890
                                                                                                                                            |                                                                                                                                        
ttggttctgcacttttctgggtggttgtcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGt                                                                                                                                  >  6:147574‑M2/141‑149 (MQ=255)
    ttctgcacttttctgggtggttgtcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTtgt                                                                                                                              <  3:97240‑M2/13‑1 (MQ=255)
        gcacttttctgggtggttgtcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTa                                                                                                                          >  3:45422‑M2/133‑149 (MQ=255)
              ttctgggtggttgtcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCtt                                                                                                                      <  4:62678‑M2/21‑1 (MQ=255)
                       gttgtcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCAcc                                                                                                           <  5:147574‑M2/32‑1 (MQ=255)
                           tcgcactgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTg                                                                                                        >  2:184150‑M2/114‑148 (MQ=255)
                                 tgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTtgtg                                                                                                                             <  4:88252‑M2/14‑1 (MQ=255)
                                 tgctgatttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTtgtg                                                                                                                             >  3:88252‑M2/108‑121 (MQ=255)
                                       tttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAggg                                                                                           >  4:147773‑M2/102‑149 (MQ=255)
                                       tttggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAggg                                                                                           >  4:98089‑M2/102‑149 (MQ=255)
                                         tggaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGc                                                                                          <  4:45422‑M2/49‑1 (MQ=255)
                                           gaaagtgtggggataactatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTc                                                                                       <  3:98089‑M2/52‑1 (MQ=255)
                                                            tatggtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAag                                                                      >  6:78623‑M2/81‑149 (MQ=255)
                                                                gtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCAc                                                                                                            >  8:131206‑M2/77‑107 (MQ=255)
                                                                gtcggtcaggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCAc                                                                                                            <  7:131206‑M2/31‑1 (MQ=255)
                                                                       aggagcaactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTAt                                                            <  3:147773‑M2/79‑1 (MQ=255)
                                                                            caactggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATgtcgt                                                       >  8:116018‑M2/65‑148 (MQ=255)
                                                                                tggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCa                                                                                                             <  2:20561‑M2/30‑1 (MQ=255)
                                                                                tggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCa                                                                                                             >  1:20561‑M2/61‑90 (MQ=255)
                                                                                 ggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAc                                                                                  <  5:34623‑M2/57‑1 (MQ=255)
                                                                                 ggagtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAAc                                                                                  >  6:34623‑M2/60‑116 (MQ=255)
                                                                                    gtcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCATGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                              <  7:116018‑M2/93‑1 (MQ=255)
                                                                                     tcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGttt                                                                                                                                >  5:150006‑M2/56‑66 (MQ=255)
                                                                                     tcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGttt                                                                                                                                <  6:150006‑M2/11‑1 (MQ=255)
                                                                                     tcgtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTAc                                              >  2:165147‑M2/56‑148 (MQ=255)
                                                                                       gtcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAggg                                                                                           <  4:67630‑M2/48‑1 (MQ=255)
                                                                                        tcaccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACgag                                           >  4:147937‑M2/53‑148 (MQ=255)
                                                                                           ccattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGc                                       <  1:165147‑M2/100‑1 (MQ=255)
                                                                                            cattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAagag                                                                                                   >  8:35070‑M2/49‑88 (MQ=255)
                                                                                            cattatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAagag                                                                                                   <  7:35070‑M2/40‑1 (MQ=255)
                                                                                             attatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAat                                                                                                                  <  5:46336‑M2/25‑1 (MQ=255)
                                                                                             attatgccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAat                                                                                                                  >  6:46336‑M2/48‑72 (MQ=255)
                                                                                                  gccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGaa                                         <  6:163053‑M2/98‑1 (MQ=255)
                                                                                                  gccagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGaa                                         >  5:163053‑M2/43‑140 (MQ=255)
                                                                                                    cagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGa                              >  8:119431‑M2/41‑149 (MQ=255)
                                                                                                    cagcatagtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGa                              >  6:127117‑M2/41‑149 (MQ=255)
                                                                                                           gtgacaatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTg                       <  1:184150‑M2/116‑1 (MQ=255)
                                                                                                                aatgaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGc                  >  2:122706‑M2/29‑149 (MQ=255)
                                                                                                                   gaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACga                                            >  5:50314‑M2/26‑120 (MQ=255)
                                                                                                                   gaaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACga                                            <  6:50314‑M2/95‑1 (MQ=255)
                                                                                                                    aaacagaaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCaaa              <  3:147937‑M2/125‑1 (MQ=255)
                                                                                                                          aaacgaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCACACCTACGAGAAGCCAGAAAGGACACGTTGCAGGCCAAAGATaa         >  7:109573‑M2/19‑148 (MQ=255)
                                                                                                                              gaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACga                                            >  6:67718‑M2/15‑109 (MQ=255)
                                                                                                                              gaaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACga                                            <  5:67718‑M2/95‑1 (MQ=255)
                                                                                                                               aaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGa                              >  2:82667‑M2/14‑122 (MQ=255)
                                                                                                                               aaacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGa                              <  1:82667‑M2/109‑1 (MQ=255)
                                                                                                                               aaaagtgaatgttACGCGCTGTTTGTGTTAGCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTa   <  8:109573‑M2/136‑1 (MQ=255)
                                                                                                                                aacgggaatgttACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAc  <  5:127117‑M2/137‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                        
TTTTCTCTGTCGATGCTCTTCTGGGCCGAACTCCTCTGGATCATTACTCACTGATCCTTGACCCCGCTGCGGCGGGGTTGTCATTTGCTTTGCCACAAGGTTTCTCCTCTTTTATCAATTTGGGTTGTTATCAAATCGTTACGCGATGTTTGTGTTATCTTTAATATTCACCCTGAAGAGAATCAGGGCTTCGCAACCCTGTCATTAAGGAGGAGCTATGTCGTCAACCCTACGAGAAGCCAGTAAGGACACGTTGCAGGCCAAAGATAAAACTTAC  >  NC_000913/1335614‑1335890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: