Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,032 IS1 (–) +8 bp intergenic (‑110/‑488) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 257908 =NA (NA)77 (0.860) 65/280 0.3 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 1293039 0 (0.000)intergenic (‑117/‑488) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 1293032 =0 (0.000)59 (0.660) 45/280 1.1 100% intergenic (‑110/‑495) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

Only 100 of 138 total aligned reads displayed.

TGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCA  >  NC_000913/1292892‑1293185
                                                                                                                                                   |                                                                                                                                                  
tgttgtTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGg                                                                                                                                                   <  5:267347‑M2/149‑2 (MQ=255)
 gttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                                  <  2:348951‑M2/149‑3 (MQ=255)
  ttgttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgg                                                                                                                                                  <  7:199176‑M2/148‑3 (MQ=255)
    atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCaa                                                                                                                                                <  3:221230‑M1/12‑1 (MQ=255)
     ttCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                              <  2:238168‑M2/149‑7 (MQ=255)
       cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatga                                                                                                                                            <  3:76765‑M2/149‑9 (MQ=255)
       cAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatg                                                                                                                                             >  7:236223‑M2/1‑141 (MQ=255)
               tAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaac                                                                                                                                     >  4:308029‑M2/1‑133 (MQ=255)
                 cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTc                                                                                                                                   >  8:296291‑M1/124‑148 (MQ=255)
                  gTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttat                                                                                                                                 >  2:320740‑M2/1‑130 (MQ=255)
                    gCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgaccccaacttatt                                                                                                                                <  8:436‑M2/148‑21 (MQ=255)
                     cTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattga                                                                                                                              >  5:271406‑M2/1‑127 (MQ=255)
                      ttCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTTTTTTGTGCCGggtaatgactccaacttattga                                                                                                                              <  7:280886‑M2/148‑23 (MQ=255)
                        cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                               >  6:152989‑M1/117‑145 (MQ=255)
                        cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATaa                                                                                                                               <  5:152989‑M1/29‑1 (MQ=255)
                        cgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcactaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAtt                                                                                                                           <  2:282704‑M1/33‑1 (MQ=255)
                         gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAAt                                                                                                                            <  7:63284‑M1/32‑1 (MQ=255)
                         gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTa                                                                                                                          >  3:202184‑M1/116‑149 (MQ=255)
                           tCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgt                                                                                                                        <  7:124423‑M2/149‑29 (MQ=255)
                             aTTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttt                                                                                                                      <  5:72015‑M2/149‑31 (MQ=255)
                                 tagtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatg                                                                                                                  <  5:19784‑M2/149‑35 (MQ=255)
                                   gtaATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgtt                                                                                                                >  6:215590‑M2/1‑113 (MQ=255)
                                   accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAg                                                                                                                >  5:174578‑M1/106‑149 (MQ=255)
                                     cccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatccactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAc                                                                                                              <  5:295814‑M1/46‑1 (MQ=255)
                                     aaTCTCATACTTATTTTGGGGTGGTTTGTTGATGTAATAATAGAGCCTTAAATTCAGTTGTGGAATAGCCAGGAATGTAAGGAATTCAAATTTGTTCTTTATTTTGTTCCGggtaatgactccaacttattgatagtgttttatgttc                                                                                                               >  8:124423‑M2/1‑111 (MQ=255)
                                      aTCTCAAACTTATATTGGGGTGGGTTGTTGAGGTAAGAATAGAGCCTTCCATTCAGTTGGGCAATAGCCAGGAAGGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaat                                                                                                                                              >  4:238702‑M2/1‑110 (MQ=255)
                                           aaaCTTATATTGGGGTGGTTTGTTGAGGCAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcaga                                                                                                            >  6:115900‑M2/1‑105 (MQ=255)
                                            gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCat                                                                                                       >  6:351773‑M1/97‑149 (MQ=255)
                                             tagctgaacaggagggacagctgatagaaacagaagcccctggagcacctcaaaaacaccatcatccactaaatcagtcagttggcagcatcaccTTGTCCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCata                                                                                                      >  6:120758‑M1/96‑149 (MQ=255)
                                              cTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcc                                                                                                     >  3:129892‑M2/1‑102 (MQ=255)
                                                 tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGc                                                                                                  <  6:179257‑M1/58‑1 (MQ=255)
                                                  tatTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccga                                                                                                  >  4:76765‑M2/1‑98 (MQ=255)
                                                      aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAt                                                                                             <  3:193676‑M1/63‑1 (MQ=255)
                                                       gggTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt                                                                                            <  8:262834‑M2/149‑57 (MQ=255)
                                                        ggtggtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgaccccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                           >  7:436‑M2/1‑92 (MQ=255)
                                                        cgtggttTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt                                                                                           >  1:364146‑M2/2‑92 (MQ=255)
                                                         agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTa                                                                                          >  6:308243‑M1/84‑149 (MQ=255)
                                                           ggtATGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATACCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtc                                                                                        >  6:24046‑M2/1‑89 (MQ=255)
                                                            gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtca                                                                                       <  8:355987‑M2/149‑62 (MQ=255)
                                                            gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                         >  7:338793‑M2/1‑88 (MQ=255)
                                                            gtTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt                                                                                         <  8:338793‑M2/147‑60 (MQ=255)
                                                            gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                       <  4:163829‑M1/69‑1 (MQ=255)
                                                              cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTc                                                                                                                                   >  5:356781‑M1/79‑103 (MQ=255)
                                                               tgttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                     <  3:297215‑M2/148‑64 (MQ=255)
                                                                gttgAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                                     <  2:89879‑M2/147‑64 (MQ=255)
                                                                    atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                               >  8:63284‑M1/73‑149 (MQ=255)
                                                                    atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAtt                                                                               >  4:221230‑M1/73‑149 (MQ=255)
                                                                     tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTAGACCGATGAttt                                                                              >  1:282704‑M1/72‑149 (MQ=255)
                                                                      agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTacac                                                                                       >  1:43221‑M1/71‑139 (MQ=255)
                                                                         aacagaagccactggagcacctcaaaaacacgataatacactaaatcagtaagttggcagcatcaacTTGTGCCGCCAATAAATATCTTTACATAAAATTAGACAGAAAAGACGCGGCATATAGCCCAATTTACACCGATGATATCg                                                                            <  8:12363‑M1/80‑1 (MQ=255)
                                                                         aacagaagccactggagcacctcaaaaacaacatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTACATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCg                                                                            <  3:333791‑M1/80‑1 (MQ=255)
                                                                           aataGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgat                                                                        <  8:167494‑M2/149‑77 (MQ=255)
                                                                                  ccTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgaga                                                                 >  7:384439‑M2/1‑66 (MQ=255)
                                                                                   cTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag                                                                                  <  6:283601‑M2/131‑67 (MQ=255)
                                                                                    ttAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                               <  6:171078‑M2/149‑86 (MQ=255)
                                                                                    ctggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGt                                                               <  8:189503‑M1/93‑1 (MQ=255)
                                                                                      aaaTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac                                                               >  7:105128‑M2/1‑62 (MQ=255)
                                                                                        aTTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                                           >  8:199176‑M2/1‑60 (MQ=255)
                                                                                          tCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                         <  2:98269‑M2/149‑92 (MQ=255)
                                                                                          tCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagc                                                         <  5:247796‑M2/149‑92 (MQ=255)
                                                                                             ctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTc                                                      <  6:341717‑M1/102‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                     <  8:23455‑M1/103‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                     <  1:259846‑M1/103‑1 (MQ=255)
                                                                                              tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTcc                                                     <  2:380071‑M1/103‑1 (MQ=255)
                                                                                                  gCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcacgatgactttgtcatgcagctacaccgattttgagaactacagctacttccg                                                 <  6:30747‑M2/149‑100 (MQ=255)
                                                                                                         ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                                          <  4:175943‑M2/149‑107 (MQ=255)
                                                                                                         ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                                           >  2:373009‑M2/1‑43 (MQ=255)
                                                                                                         ccAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgac                                                                                                                                           <  1:373009‑M2/52‑10 (MQ=255)
                                                                                                           aGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccg                                        <  8:279457‑M2/149‑109 (MQ=255)
                                                                                                            ggAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgt                                       >  7:355987‑M2/1‑40 (MQ=255)
                                                                                                             gAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtg                                      <  8:173590‑M2/149‑111 (MQ=255)
                                                                                                                  taaatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTAt                                 <  1:231299‑M1/123‑1 (MQ=255)
                                                                                                                  tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcccgg                                 <  8:363679‑M2/149‑116 (MQ=255)
                                                                                                                  tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                                  >  7:263338‑M2/1‑34 (MQ=255)
                                                                                                                  tAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGgggaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                                 <  1:148263‑M2/149‑116 (MQ=255)
                                                                                                                   aaGGAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttagtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggt                                <  4:11990‑M2/149‑117 (MQ=255)
                                                                                                                    aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                                         <  3:50066‑M1/83‑1 (MQ=255)
                                                                                                                    aatcagtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCgcag                                                                         >  4:50066‑M1/25‑107 (MQ=255)
                                                                                                                      gAATTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcattcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgct                             <  5:88205‑M2/149‑120 (MQ=255)
                                                                                                                        agtaagttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGgag                           >  3:163829‑M1/21‑149 (MQ=255)
                                                                                                                        aTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgc                           >  7:173590‑M2/1‑28 (MQ=255)
                                                                                                                        aTTCAAAATTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagcc                                         <  7:145153‑M2/135‑108 (MQ=255)
                                                                                                                         gtaagttggcagcatcaccTTGTGGCGCCAATTAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATggg                              <  7:88130‑M1/126‑1 (MQ=255)
                                                                                                                            agttggcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTa                       >  1:272997‑M1/17‑149 (MQ=255)
                                                                                                                            aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgtcagcgacttccgtcccagccgtgccaggtgctgcctca                       >  1:348054‑M2/1‑24 (MQ=255)
                                                                                                                            aaaaTTGTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctc                        >  6:88205‑M2/1‑24 (MQ=255)
                                                                                                                                 gcagcatcaccTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTa                  >  8:256106‑M1/12‑149 (MQ=255)
                                                                                                                                  gTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttctgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc                  >  6:72015‑M2/1‑18 (MQ=255)
                                                                                                                                  gTTCTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattc                  >  7:262834‑M2/1‑18 (MQ=255)
                                                                                                                                     cTTTATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcagg               >  5:30747‑M2/1‑15 (MQ=255)
                                                                                                                                        tATTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggtta            >  3:11990‑M2/1‑12 (MQ=255)
                                                                                                                                         aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                                  >  2:253601‑M2/1‑11 (MQ=255)
                                                                                                                                         aTTTTGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccag                                  <  1:253601‑M2/125‑115 (MQ=255)
                                                                                                                                          ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatgc         >  1:238168‑M2/1‑10 (MQ=255)
                                                                                                                                          ttttGTGCCGggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcctcagattcaggttatg          >  1:89879‑M2/1‑10 (MQ=255)
                                                                                                                                           cTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTgacgac        <  3:220463‑M1/148‑1 (MQ=255)
                                                                                                                                                gccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCttt    <  2:52316/148‑1 (MQ=255)
                                                                                                                                                 ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa  <  8:256844/149‑1 (MQ=255)
                                                                                                                                                 ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa  <  3:253375/149‑1 (MQ=255)
                                                                                                                                                 ccgccAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCa  <  5:341717/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGTTGTTCAGAATTTTAAGTGCTTCGCTCATTGTAGTAATCTCAAACTTATATTGGGGTGGTTTGTTGAGGTAATAATAGAGCCTTAAATTCAGTTGTGCAATAGCCAGGAATGTAAGGAATTCAAAATTGTTCTTTATTTTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAACTTCCTGATTCATGTCACATTTTATGGGGAGATTATCGTAGGCTGACGACCTTTCA  >  NC_000913/1292892‑1293185

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.