New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	925857 =	35 (0.920)	10 (0.290) +ACGGGCTTTTT	6/242	3.7	23.8%	intergenic (+317/+27)	clpA/serW	ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity/tRNA‑Ser
	?	NC_000913	1097195 =	NA (NA)					intergenic (+366/+370)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

TTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGG  >  NC_000913/925713‑926002                                                                                                                                                  |                                                                                                                                                  ttttGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTTCAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACttt                                                                                                                                               >  4:626/1‑149 (MQ=255) ttttGCTTTATTAACAACGGGCTAAACGTGTAGTATTAGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACttt                                                                                                                                               >  3:111840/1‑149 (MQ=255)          attaACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAg                                                                                                                                       <  1:31689/148‑1 (MQ=255)            taACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGctc                                                                                                                                    >  1:35198/1‑149 (MQ=255)                                    tttGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAgggg                                                                                                            <  2:35198/149‑1 (MQ=255)                                     ttGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                           >  5:52898/1‑149 (MQ=255)                                                    tACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                                  <  6:76582/143‑1 (MQ=255)                                                    tACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGaa                                                                                                  >  5:76582/1‑143 (MQ=255)                                                                aGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGcc                                                                                  <  3:626/147‑1 (MQ=255)                                                                 gAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta                                                                               <  4:18846/149‑1 (MQ=255)                                                                  aaaTTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGta                                                                               >  1:201365/1‑149 (MQ=255)                                                                        acaGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCTTATacacac                                                                        <  6:52898/149‑1 (MQ=255)                                                                                     tCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGc                                                           >  2:570/1‑149 (MQ=255)                                                                                       cACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAAAATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTc                                                         >  6:47395/1‑149 (MQ=255)                                                                                                  caTGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAat                                                                                                                          <  8:107625/73‑1 (MQ=255)                                                                                                  caTGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAat                                                                                                                          >  7:107625/1‑73 (MQ=255)                                                                                                   aTGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc                                             <  1:570/149‑1 (MQ=255)                                                                                                    tGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCg                                            >  1:147340/1‑149 (MQ=255)                                                                                                     gTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                           >  2:78320/1‑85 (MQ=255)                                                                                                     gTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAggggg                                                                                                           <  1:78320/85‑1 (MQ=255)                                                                                                     gTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCg                                            >  4:120291/1‑148 (MQ=255)                                                                                                           tGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCg                                            <  6:9202/142‑1 (MQ=255)                                                                                                           tGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCg                                            >  5:9202/1‑142 (MQ=255)                                                                                                             ccGTACAGACAGATAAAATGCGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAcc                                      <  2:201365/147‑1 (MQ=255)                                                                                                                       agaTAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCgg                                                                                                                   >  5:122043/1‑59 (MQ=255)                                                                                                                       agaTAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCgg                                                                                                                   <  6:122043/59‑1 (MQ=255)                                                                                                                         aTAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAcc                                      >  3:83678/1‑134 (MQ=255)                                                                                                                         aTAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACAcc                                      <  4:83678/134‑1 (MQ=255)                                                                                                                               tGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTAc                  >  1:114785/1‑148 (MQ=255)                                                                                                                                  g‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCaaa              <  2:167754/149‑1 (MQ=255)                                                                                                                                             cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGttt                        <  1:160873/129‑1 (MQ=35)                                                                                                                                             cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGttt                        >  2:160873/1‑129 (MQ=35)                                                                                                                                             cTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGt    <  2:147340/149‑1 (MQ=255)                                                                                                                                              tCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTg   >  6:130994/1‑149 (MQ=255)                                                                                                                                                gCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTgg  >  7:36466/1‑148 (MQ=255)                                                                                                                                                  aCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACATTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGtttt                       >  1:27695/1‑125 (MQ=17)                                                                                                                                                  aCTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACATTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGtttt                       <  2:27695/125‑1 (MQ=17)                                                                                                                                                  |                                                                                                                                                  TTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGAGTTCACTGCCGTACAGGCAGCTTAGAAATTCACAGGTAACATACTCCACCCGCCCACCATGTTCACTGCCGTACAGACAGATAAAATGCG‑AAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGG  >  NC_000913/925713‑926002

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.