New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 189788 | 31 (1.120) | 4 (0.150) | 4/250 | 2.9 | 12.5% | noncoding (77/136 nt) | tff | novel sRNA, function unknown |
? | NC_000913 | = 189828 | 27 (1.030) | noncoding (117/136 nt) | tff | novel sRNA, function unknown | |||||
Rejected: Frequency below/above cutoff threshold. |
ACAATTATTGGTGTCCACGACGTATTTGTGGTATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/189669‑189788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgtatcCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGTTGTTACACAAAGTGAGATTGTCGCTTCCGTCCAGTCTGTGTATACGAAATGGATCGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTG < NC_000913/189828‑189684 ACAATTATTGGTGTCCACGACGTATTTGTGGTATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATCCCATATTACCGACCCCAAAGGGCACCCCG > 2:33708/1‑149 TATTTGTGGTATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGT < 1:33708/149‑1 TATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGGTACGTGTGTGT > 5:123940/1‑142 TATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGT < 6:123940/142‑1 TATCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGTTGTTCCACAAAGTGAGATTGTCGCTTCCGTCCAGTCTGTGTATACGAAATGGATCGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTG < 4:72422/149‑1 TCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGTTGTTACACAAAGTGAGATTGTCGCTTCCGTCCAGTCTGTGTATACGAAATGGATCGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTG < 1:50104/147‑1 TCCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGTTGTTACACAAAGTGAGATTGTCGCTTCCGTCCAGTCTGTGTATACGAAATGGATCGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTG > 2:50104/1‑147 ACAATTATTGGTGTCCACGACGTATTTGTGGTATAAAGCGCGCCGGACTTCCGATCCATTTCGTATACACAGACTGGACGGAAGCGACAATCTCACTTTGTGTAACAACACACACGTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/189669‑189788 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgtatcCCATATTACCGACCCCAAAGGGCACCCCGGAATATGTGCCGATACGTGTGTGTTGTTACACAAAGTGAGATTGTCGCTTCCGTCCAGTCTGTGTATACGAAATGGATCGGAAGTCCGGCGCGCTTTATACCACAAATACGTCGTG < NC_000913/189828‑189684 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |