New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1388282NA (NA)6 (0.190) 10/222 2.2 NA noncoding (11/25 nt) REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 1388285 NA (NA)noncoding (14/25 nt) REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences

CCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCT  >  NC_000913/1388140‑1388428
                                                                                                                                              |                                                                                                                                                  
cccAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGttgcac                                                                                                                                              >  3:149106‑M1/1‑143 (MQ=255)
 ccAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGttgcac                                                                                                                                              >  2:184672‑M1/1‑142 (MQ=255)
   aGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccat                                                                                                                                           <  1:201556‑M2/149‑7 (MQ=255)
     cTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatca                                                                                                                                         >  4:149106‑M2/1‑141 (MQ=255)
        tATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGGCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcag                                                                                                                                        >  2:150137‑M2/1‑138 (MQ=255)
            gCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcaggcatat                                                                                                                                  >  1:184672‑M2/1‑134 (MQ=255)
               aTTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTa                                                                                                                                >  7:99167/1‑148 (MQ=255)
                                 aaCTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCa                                                                                                                   <  1:184044/143‑1 (MQ=255)
                                 aaCTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCa                                                                                                                   >  2:184044/1‑143 (MQ=255)
                                        aaaaCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCGGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCGTCAGGCATATTAAAGTATggctt                                                                                                                     >  6:106561/1‑130 (MQ=255)
                                          aaCGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctg                                                                                                    >  1:78877/1‑149 (MQ=255)
                                                tcGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatca                                                                                                                                         <  6:84494‑M2/106‑9 (MQ=255)
                                                tcGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatca                                                                                                                                         >  5:84494‑M2/1‑98 (MQ=255)
                                                  ggCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGc                                                                                                            <  6:84222/133‑1 (MQ=255)
                                                  ggCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGc                                                                                                            >  5:84222/1‑133 (MQ=255)
                                                         cacaTACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGc                                                                                      <  8:99167/148‑1 (MQ=255)
                                                          acaTACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccat                                                                                            >  4:53477‑M2/1‑88 (MQ=255)
                                                          acaTACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccat                                                                                            <  3:53477‑M2/141‑54 (MQ=255)
                                                                cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCgg                                                                                       >  6:75847/1‑140 (MQ=255)
                                                                cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCgg                                                                                       <  5:75847/140‑1 (MQ=255)
                                                                cgcgATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                              >  6:17517/1‑149 (MQ=255)
                                                                     ttGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGAtt                                                                          >  5:104775/1‑148 (MQ=255)
                                                                        ccAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCa                                                                       <  2:201556/148‑1 (MQ=255)
                                                                         cAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTa                                                                                             >  1:66158/1‑125 (MQ=255)
                                                                         cAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTa                                                                                             <  2:66158/125‑1 (MQ=255)
                                                                            taggTTGCGGTAATATGGTCTGAGTCAGATGAAGTAGGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCTTCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCGGCTTCGTAATCCGGCTc                                                                                    <  8:82302/128‑1 (MQ=255)
                                                                            taggTTGCGGCAAAATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGCTGGTGCAACACCATCAGGCATAATAAATTATGCTTTCAGTACAGACAGAGCAGCTACGTAATCCGGCTc                                                                                    >  7:82302/4‑131 (MQ=255)
                                                                               gTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAAcaccatcag                                                                                                                                        <  6:103090‑M2/76‑10 (MQ=255)
                                                                                        atatGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGa                                                       >  5:63715/1‑148 (MQ=255)
                                                                                          atGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgt                                                            <  3:53477‑M1/141‑89 (MQ=255)
                                                                                          atGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgt                                                            >  4:53477‑M1/1‑53 (MQ=255)
                                                                                            ggTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgct                                                                                                  >  8:33368/1‑101 (MQ=255)
                                                                                            ggTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAgctgct                                                                                                  <  7:33368/101‑1 (MQ=255)
                                                                                              tCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATca                                                 >  8:39630/1‑148 (MQ=255)
                                                                                                tGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATcac                                                <  2:47702/147‑1 (MQ=255)
                                                                                                tGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATcac                                                >  1:47702/1‑147 (MQ=255)
                                                                                                   gTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgctggc                                                          >  8:140217/1‑134 (MQ=255)
                                                                                                   gTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgctggc                                                          <  7:140217/134‑1 (MQ=255)
                                                                                                    tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttct                                                                                                        >  4:55824‑M1/1‑43 (MQ=255)
                                                                                                    tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttct                                                                                                        <  3:55824‑M1/87‑45 (MQ=255)
                                                                                                    tCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTc                                          <  2:78877/149‑1 (MQ=255)
                                                                                                      agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcaggcatattcgcgcttactcttcgttcttcttctga                                                                                                      >  4:55824‑M2/1‑44 (MQ=255)
                                                                                                      agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGTTGcaccatcaggcatattcgcgcttactcttcgttcttcttctga                                                                                                      <  3:55824‑M2/87‑44 (MQ=255)
                                                                                                      agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgc                                                              >  8:113901/1‑127 (MQ=255)
                                                                                                      agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAgc                                                              <  7:113901/127‑1 (MQ=255)
                                                                                                      agaagaagaACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCAt                                        >  6:88511/1‑149 (MQ=255)
                                                                                                        aagaagaaCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCttt                                                                                                                     <  8:60873/70‑1 (MQ=255)
                                                                                                               aCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                              <  6:1603/102‑1 (MQ=255)
                                                                                                               aCGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggtggt                                                                              >  5:1603/1‑102 (MQ=255)
                                                                                                                cGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGa                                                                            >  7:144850/1‑103 (MQ=255)
                                                                                                                cGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGa                                                                            <  8:144850/103‑1 (MQ=255)
                                                                                                                 gAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATa                             <  6:104775/149‑1 (MQ=255)
                                                                                                                      gTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACcac                        <  6:63715/149‑1 (MQ=255)
                                                                                                                       tAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                             >  1:65342/1‑127 (MQ=255)
                                                                                                                       tAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                             <  2:65342/127‑1 (MQ=255)
                                                                                                                               aaTATGCCTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCAc                <  6:69074/148‑1 (MQ=255)
                                                                                                                                atatGCCTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgc              >  1:184672‑M1/1‑15 (MQ=255)
                                                                                                                                atatGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCAcgc              <  5:88511/149‑1 (MQ=255)
                                                                                                                                     ccTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAg                                                               >  3:79212/1‑95 (MQ=255)
                                                                                                                                     ccTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAg                                                               <  4:79212/95‑1 (MQ=255)
                                                                                                                                      cTGATGGTGttgcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaac                                                                                 <  6:103090‑M1/76‑68 (MQ=255)
                                                                                                                                      cTGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagcccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgata          >  2:150137‑M1/1‑9 (MQ=255)
                                                                                                                                      cTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                             <  3:141629/112‑1 (MQ=255)
                                                                                                                                      cTGATGGTGTTGCACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACAtt                                             >  4:141629/1‑112 (MQ=255)
                                                                                                                                      cTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGc         >  1:133697/1‑148 (MQ=255)
                                                                                                                                       tGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaag       >  4:149106‑M1/1‑8 (MQ=255)
                                                                                                                                       tGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccga                                                  >  5:84494‑M1/1‑8 (MQ=255)
                                                                                                                                       tGATGGTGcaacaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccga                                                  <  6:84494‑M1/106‑99 (MQ=255)
                                                                                                                                       tGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGc         >  4:61298/1‑147 (MQ=255)
                                                                                                                                        gATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggt                                                                                 >  5:66962/1‑74 (MQ=255)
                                                                                                                                        gATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCggt                                                                                 <  6:66962/74‑1 (MQ=255)
                                                                                                                                         aTGGTGttgcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaagct     <  1:201556‑M1/149‑144 (MQ=255)
                                                                                                                                            gTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaagctggg  >  3:149106‑M2/1‑6 (MQ=255)
                                                                                                                                            gTGCAAcaccatcaggcatattcgcgcttactcttcgttcttcttctgactcagaccatattcccgcaacttattggcaatcgcggtatgtgaaacgccgagacgttttgccagtttgcgcgtgctgggataattgcgataaagctgg   >  2:184672‑M2/1‑6 (MQ=255)
                                                                                                                                            gTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCt  >  6:172310/1‑149 (MQ=255)
                                                                                                                                              |                                                                                                                                                  
CCCAGCTTTATCGCAATTATCCCAGCACGCGCAAACTGGCAAAACGTCTCGGCGTTTCACATACCGCGATTGCCAATAAGTTGCGGGAATATGGTCTGAGTCAGAAGAAGAACGAAGAGTAAGCGCGAATATGCCTGATGGTGCAACACCATCAGGCATATTAAATTATGCTTTCAGTACAGCCAGAGCTGCTTCGTAATCCGGCTCGGTGGTGATTTCATCCACCAGCTGGCTGAAAATCACATTGTCATTTTCGTCAATAACCACAACGGCACGCGCTGCCAGACCT  >  NC_000913/1388140‑1388428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.