New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4555361 =	42 (1.150)	7 (0.210)	7/246	3.1	15.6%	intergenic (+12/+129)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
	?	NC_000913	4555390 =	37 (1.100)					intergenic (+41/+100)	uxuR/yjiC	fructuronate‑inducible hexuronate regulon transcriptional repressor; autorepressor/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4555403‑4555361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913/4555390‑4555531                                                                                                                                                                                           TTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGATTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATT                                       >  4:125120/1‑148           AAGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGT                                                                  <  5:73088/111‑1           AAGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGT                                                                  >  6:73088/1‑111            AGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAA                                                                           <  1:75993/101‑1            AGAAAGCGCAAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAA                                                                           >  2:75993/1‑101                     aattatCGTTTACACTTGAGATTTCTTAATTTAAGTAGTCGCAATTAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTTAATGTTATTACTCATTTTTCCTGGTAGTTATTTAACAATATAATTCCATTCA                   <  3:90488/142‑1                     AAGGAACGTTTACCCTTGCGCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAAATGCAGGGTATTGTTTAGCTATCTGTATACCCTTAATGTTAGTAATCATTCTTCCTTGTAGTTATTTACCAATATAATTCCATTaa                   >  4:90488/1‑146                                        GCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  <  3:47729/146‑1                                        GCTTTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  4:47729/1‑146                                                                                                                                                                                           TTCTTAATTTAAGAAAGCGCAAGGAACGTTTACCCTTGCGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4555403‑4555361 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccttgcgcttTCTTAAATTAAGAAGTCGCAATGAGTATTACTTTGTAAATTGCAGGGTATTGTTTAGCTATCTGTATAACCTGAATGTTAGTACTCATTCTTCCTGGTAGTTATTTACCAATATAATTCCATTCACCATTTTTTAATTCAAA  >  NC_000913/4555390‑4555531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.