New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 394471 | 213 (1.640) | 9 (0.080) | 8/254 | 10.6 | 4.4% | intergenic (+53/‑35) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator |
? | NC_000913 | = 394475 | 194 (1.650) | intergenic (+57/‑31) | yaiT/yaiV | pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein/putative transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTTAGCTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/394311‑394471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAAG < NC_000913/394475‑394328 TTTAGCTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAAT < 4:468781/149‑1 AGCTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAAT > 2:548896/1‑149 GCTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATG > 2:138337/1‑149 CTTCACCAAGACCTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGGGGTGACGTAGATCAAGACTGGTCCGCGCACGGGGGTGTGAACTATACCTGGTAATATTCTTCACTCCGAAGCAATACTGGTAATTTACTCTAAATAATGC > 1:546234/1‑149 CTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGC < 7:419780/149‑1 TTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC > 6:468743/1‑149 TCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGATCGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCC > 2:116223/1‑149 CACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCG > 4:378733/1‑149 CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCTAGACTGGTCAGCGACCGTGCGTGTTAAATATACCTGGTAATATACTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATACCCGTC > 5:464183/1‑148 CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 8:62138/1‑148 CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 4:426010/1‑148 CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCAGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTAACTCCGAAGAAATACTGGTAATTTAATCTAAATAACGCCCGTC > 6:363603/1‑148 CAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACGGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCCCTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 6:324891/1‑148 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 1:83553/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 1:193502/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 8:199237/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 3:224111/1‑147 AAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTC > 4:188928/1‑147 AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC > 5:56477/1‑142 AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC < 6:56477/142‑1 AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAAT < 4:89332/136‑1 AGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAAT > 3:89332/1‑136 GCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGG < 5:309060/149‑1 TACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTA < 1:138337/149‑1 TAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC > 1:129710/1‑117 TAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCC < 2:129710/117‑1 AACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA > 8:567588/1‑122 AACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA < 7:567588/122‑1 ACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCC > 8:288499/1‑116 ACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCC < 7:288499/116‑1 CCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGG > 1:191787/1‑129 CCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGG < 2:191787/129‑1 CGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGA < 7:400495/149‑1 ATCAAGACTGGTCCGCGCACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAA < 6:215973/149‑1 TCCGCGAACGTGGGTCTTAAATATACCTCGTAATATTCATCACTCCGAAGAAATACTGCTAATATAATCAAAATAATGCCCGTCAAATCCTTCACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCA < 1:116223/149‑1 ACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAAT < 2:307756/135‑1 ACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAAT > 1:307756/1‑135 TAATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTA > 3:183392/1‑149 ATGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTA > 7:452543/1‑147 TGCCCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAG < 8:384343/149‑1 TGCCCCTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAG > 2:83553/1‑149 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG > 1:548896/1‑149 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG > 7:199237/1‑149 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG < 6:144427/149‑1 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGG > 6:521793/1‑128 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGG < 5:521793/128‑1 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGA < 5:127776/126‑1 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGA > 6:127776/1‑126 CCGTCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTAAGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCG > 3:57189/1‑149 ctTCAAATGCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTATTCGGAGTGAAGAATATTACCAGGTTTATTTAACACCCACGTTGGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGC < 4:183392/147‑1 CGTCAAATCCTTGACGGTCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGC < 6:475470/149‑1 TCAAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTATTCGGAGTGAAGAATATTACCAGGTATATTTAAAACCCACGATCTCGGACCAGTCTTGATCTACGGCACCACCACAGAGGGAGTTAGCATCGGTATCTGCGCTG > 2:546234/1‑149 AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAA < 8:118239/149‑1 AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTG > 7:332631/1‑147 AAATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTG > 8:257642/1‑147 AATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAAG < 7:409228/149‑1 AATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAAG > 6:269247/1‑149 AATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAAG < 3:223903/149‑1 TTTAGCTTCACCAAGAACTTCAGCGCCTATACCGATGCTAACTACCTCGGTGGTGGTGACGTAGATCAAGACTGGTCCGCGAACGTGGGTGTTAAATATACCTGGTAATATTCTTCACTCCGAAGAAATACTGGTAATTTAATCTAAATAATGCCCGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/394311‑394471 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taatgcccgtcaaATCCTTGACGGGCATTATTTAGATTAAATTACCAGTATTTCTTCGGAGTGAAGAATATTACCAGGTATATTTAACACCCACGTTCGCGGACCAGTCTTGATCTACGTCACCACCACCGAGGTAGTTAGCATCGGTATAGGCGCTGAAG < NC_000913/394475‑394328 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |