New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4213168 =	152 (1.150)	9 (0.070)	9/238	10.8	5.9%	intergenic (+9/‑66)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
	?	NC_000913	4213199 =	150 (1.240)					intergenic (+40/‑35)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4213325‑4213168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttttTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTTAATC  >  NC_000913/4213199‑4213344                                                                                                                                                                                                                                                                                                                  CTGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGAC                                                                                                                                                              <  7:132635/148‑1  TGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCG                                                                                                                                                            >  2:575015/1‑149  TGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCG                                                                                                                                                            >  3:574367/1‑149  TGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCT‑‑TGGACCGGG                                                                                                                                                          >  2:203052/1‑149    AAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGG                                                                                                                                                          <  1:38121/149‑1      GGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCT‑‑TGGACCGGGGTTT                                                                                                                                                      <  1:203052/149‑1          GCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT                                                                                                                                                    <  7:3263/149‑1          GCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATACCCTTCATCATTCAAATAATTGATATGCAAAAAACCCCGCCCTTATGGACCGGGGTTTTT                                                                                                                                                    >  1:479782/1‑149                         TCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT                                                                                                                                                    >  8:416680/1‑134                         TCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT                                                                                                                                                    <  7:416680/134‑1                                       AAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT                                                                                                                                                    >  1:3180/1‑120                                       AAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT                                                                                                                                                    <  2:3180/120‑1                                         GATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATTTGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTTTGCAAATCAATTATTTGCATGATGAAGGGAA                                                                                                                     >  5:136654/1‑149                                         GATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGG                                                                                                                                                          >  4:196632/1‑112                                         GATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGG                                                                                                                                                          <  3:196632/112‑1                                                          TGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATTTGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTTTGCAAATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTG                                                                                                     <  6:136654/148‑1                                                                                           ATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTC                                                                   >  6:224092/1‑149                                                                                                                             GCAAAAAACCCCGGCCTTATGGACCGGGGTTTTTCGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTATTCAAATTACTGTTC                                                                   >  3:354714/1‑115                                                                                                                             GCAAAAAACCCCGGCCTTATGGACCGGGGTTTTTCGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTC                                                                   <  4:354714/115‑1                                                                                                                                      CCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT                                          <  7:405723/131‑1                                                                                                                                      CCCGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGT                                          >  8:405723/1‑131                                                                                                                                        CGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCA                      <  5:224092/149‑1                                                                                                                                        CGGCCTTATGGACCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCT                                                                                                      <  6:200698/69‑1                                                                                                                                                     CGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCT         >  5:186585/1‑149                                                                                                                                                     CGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTC                       <  1:536933/135‑1                                                                                                                                                     CGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTC                       >  2:536933/1‑135                                                                                                                                                     CGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTC                                                                                     >  8:74348/1‑73                                                                                                                                                     CGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTC                                                                                     <  7:74348/73‑1                                                                                                                                                      GGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCG                                                                  >  2:160197/1‑91                                                                                                                                                      GGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCG                                                                  <  1:160197/91‑1                                                                                                                                                            TTTTGCATATCAAATATTTGCATGATGAAGGGAATCTCATCTCAGTTCTGTATAGCCAAATTCGTCGTAATCAAATGACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGCCGCTGCCTTCAGTAACCAGCGACTGTTAAac  >  2:74243/1‑147                                                                                                                                                                                                                                                                                                                  CTGAAGGCAGCGTCTCCTGACACTTCACGTTTGCTTTCAAGATCGCGAACAGTAATTTGATTACGACGAATTTGGATATACAGAACTGACATGAGATTCCCTTCATCATGCAAATAATTGATATGCAAAAAACCCCGGCCTTATGGACCGGGGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4213325‑4213168 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggggtttttTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTCGTAATCAAATTACTGTTCGCGATCTTGAAAGCAAACGTGAAGTGTCAGGAGACGCTGCCTTCAGTAACCAGCGCCTGTTAATC  >  NC_000913/4213199‑4213344

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.