New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3805341 =	62 (1.940)	5 (0.160)	5/254	3.0	8.1%	coding (610/798 nt)	waaP	kinase that phosphorylates core heptose of lipopolysaccharide
	?	NC_000913	3805362 =	52 (1.650)					coding (589/798 nt)	waaP	kinase that phosphorylates core heptose of lipopolysaccharide
Rejected: Frequency below/above cutoff threshold.

GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3805480‑3805341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCTTTTGCACGTATCTGT  >  NC_000913/3805362‑3805378                                                                                                                                                               GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCAGCGGCGCGGTACTTTTGCAC          <  1:16931/149‑1                        TTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA                   <  1:100281/117‑1                        TTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA                   >  2:100281/1‑117                                          ATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTTTGCACGTATCTGT  <  5:139209/116‑1                                          ATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTTTGCACGTATCTGT  >  6:139209/1‑116                                                                       TTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTT               <  1:85798/74‑1                                                                       TTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTATCGCGCCAGCGGCGCGGTACTTT               >  2:85798/1‑74                                                                                                                                                               GATAAATCACCGCGACTGTTACATTTGCCACTTTTTGCTTCATTTGCCATTTACTGGCCGGGAAGATGAATTAAAAATTTCAGTTATCGATCTGCATCGGGCACAGATACGTGCAAAAGTACCGCGCCGCTGGCGCGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3805480‑3805341 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taCTTTTGCACGTATCTGT  >  NC_000913/3805362‑3805378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.