New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 396770354 (1.330)6 (0.160) 8/236 2.7 10.3% intergenic (+27/‑213) rho/wecA transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
?NC_000913 = 3967707 55 (1.490)intergenic (+31/‑209) rho/wecA transcription termination factor/UDP‑GlcNAc:undecaprenylphosphate GlcNAc‑1‑phosphate transferase
Rejected: Frequency below/above cutoff threshold.

TCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACTT  >  NC_000913/3967561‑3967850
                                                                                                                                              |                                                                                                                                                   
tCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTaaacac                                                                                                                                               >  1:179431‑M1/1‑143 (MQ=255)
   tGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTacgtg                                                                                                                                            <  3:42316‑M2/149‑6 (MQ=255)
     cgcAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTaaacacgtggc                                                                                                                                          <  2:179431‑M1/149‑12 (MQ=255)
          aaTCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTacgtggcgtttt                                                                                                                                     <  2:126175‑M2/149‑13 (MQ=255)
            tCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGc                                                                                                                                   <  1:205096/149‑1 (MQ=255)
            tCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGc                                                                                                                                   <  3:40089/149‑1 (MQ=255)
                      gATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtt                                                                                                                                       >  3:92354‑M2/1‑125 (MQ=255)
                      gATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtt                                                                                                                                       <  4:92354‑M2/135‑11 (MQ=255)
                        tGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTacgtggcgtt                                                                                                                                       <  2:206782‑M2/133‑11 (MQ=255)
                        tGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTacgtggcgtt                                                                                                                                       >  1:206782‑M2/1‑123 (MQ=255)
                           gCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAAt                                                                                                                    >  3:1882/1‑149 (MQ=255)
                            cGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATc                                                                                                                   <  4:42316/149‑1 (MQ=255)
                            cGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATc                                                                                                                   <  6:141964/149‑1 (MQ=255)
                                    aTGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGcc                                                                                                           >  6:48466/1‑149 (MQ=255)
                                                   tCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtttttggcataagacaaatttatgagcgtttcatcattt                                                                                                  >  3:156292‑M2/1‑96 (MQ=255)
                                                   tCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtttttggcataagacaaatttatgagcgtttcatcattt                                                                                                  <  4:156292‑M2/143‑48 (MQ=255)
                                                        aataaACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGaa                                                                                        >  1:23950/1‑148 (MQ=255)
                                                         ataaACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTgg                                                                                                    <  3:83203/135‑1 (MQ=255)
                                                         ataaACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTgg                                                                                                    >  4:83203/1‑135 (MQ=255)
                                                           aaaCTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAAtt                                                                                    >  5:15514/1‑149 (MQ=255)
                                                              cTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCt                                                                                 <  6:96314/149‑1 (MQ=255)
                                                               tGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTg                                                                                >  1:41299/1‑149 (MQ=255)
                                                                 gCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATg                                                                                               <  2:208517/132‑1 (MQ=255)
                                                                 gCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATg                                                                                               >  1:208517/1‑132 (MQ=255)
                                                                  cAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGaa                                                                             >  1:152113/1‑149 (MQ=255)
                                                                   aaTGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatc                                                                                                      <  8:156655‑M1/123‑48 (MQ=255)
                                                                   aaTGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatc                                                                                                      >  7:156655‑M1/1‑76 (MQ=255)
                                                                     tGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAAttt                                                                          >  4:44183/1‑149 (MQ=255)
                                                                         caataccaaTGACGATTTATTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTa                                                                                            >  6:134330/1‑127 (MQ=255)
                                                                         caagaccaaTGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTa                                                                                            <  5:134330/127‑1 (MQ=255)
                                                                         caagaccaaTGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTg                                                                      <  1:126175/149‑1 (MQ=255)
                                                                             accaaTGACGATTTCTTCGAAATGAGGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCAt                                                                  <  3:44183/149‑1 (MQ=255)
                                                                                   gACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTaa                                                                                                               <  2:819/98‑1 (MQ=255)
                                                                                   gACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTaa                                                                                                               >  1:819/1‑98 (MQ=255)
                                                                                    aCGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATg                                                            >  6:89557/1‑148 (MQ=255)
                                                                                    aCGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATg                                                            <  2:41299/148‑1 (MQ=255)
                                                                                         ttcttcGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAAttt                                                      >  2:90416/1‑149 (MQ=255)
                                                                                            ttcGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCa                                                   >  2:56272/1‑149 (MQ=255)
                                                                                                aaaTGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatga                                                     <  4:156292‑M1/143‑97 (MQ=255)
                                                                                                aaaTGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatga                                                     >  3:156292‑M1/1‑47 (MQ=255)
                                                                                                aaaTGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGTCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATc                                               <  3:23822/149‑1 (MQ=255)
                                                                                                 aaTGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATc                                               >  1:103775/1‑148 (MQ=255)
                                                                                                 aaTGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATc                                               >  3:42040/1‑148 (MQ=255)
                                                                                                   tgatgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCaaa                                            >  5:167943/1‑149 (MQ=255)
                                                                                                   tgatgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCaaa                                            >  4:45733/1‑149 (MQ=255)
                                                                                                    gatgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcatt                                                                     >  7:156655‑M2/1‑47 (MQ=255)
                                                                                                    gatgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTAAACacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcatt                                                                     <  8:156655‑M2/123‑77 (MQ=255)
                                                                                                     atgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAAt                                           <  7:144394/148‑1 (MQ=255)
                                                                                                      tgaAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATgg                                         <  6:15514/149‑1 (MQ=255)
                                                                                                           cGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAAt                                    <  2:103775/149‑1 (MQ=255)
                                                                                                           cGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAAt                                    <  1:90416/149‑1 (MQ=255)
                                                                                                              tCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAAtttt                                 >  1:121769/1‑149 (MQ=255)
                                                                                                                aTAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAAtttt                                 <  2:121769/147‑1 (MQ=255)
                                                                                                                 tAAATTTGTCTTATGCCAAAAACGGCACGTGTTTACGTTGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGAGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGc                              <  3:126902/149‑1 (MQ=255)
                                                                                                                    aTTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGcaca                           <  5:89557/149‑1 (MQ=255)
                                                                                                                     tttGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAg                          >  8:100341/1‑149 (MQ=255)
                                                                                                                         tCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTGTATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACt                      >  5:42496/1‑149 (MQ=255)
                                                                                                                           ttATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATTTTATGCAATTTGCATATCAAATGGTTAAtt                                   >  4:44809/1‑134 (MQ=255)
                                                                                                                           ttATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATTTTATGCAATTTGCATATCAAATGGTTAAtt                                   <  3:44809/134‑1 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCt                                                                                 <  1:133112/82‑1 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCt                                                                                 >  2:133112/1‑82 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATgg                                         <  3:157364/122‑1 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATgg                                         >  4:157364/1‑122 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACtggt                   <  5:90105/144‑1 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACtggt                   >  6:90105/1‑144 (MQ=255)
                                                                                                                                 cAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGtt              >  5:58922/1‑149 (MQ=255)
                                                                                                                                   aaaaCGCCACGTaaacacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatcgggtgaatgatt            <  2:126175‑M1/149‑138 (MQ=255)
                                                                                                                                     aaCGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatc                        >  3:92354‑M1/1‑10 (MQ=255)
                                                                                                                                     aaCGCCACGTgtttacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatc                        <  4:92354‑M1/135‑126 (MQ=255)
                                                                                                                                     aaCGCCACGTaaacacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgccca                          <  2:206782‑M1/133‑124 (MQ=255)
                                                                                                                                     aaCGCCACGTaaacacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgccca                          >  1:206782‑M1/1‑10 (MQ=255)
                                                                                                                                      aCGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGaa         <  4:1882/149‑1 (MQ=255)
                                                                                                                                        gCCACGTGTTTacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatcgggtgaatgattttgcg       <  2:179431‑M2/149‑139 (MQ=255)
                                                                                                                                          cACGTaaacacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatcgggtgaatgattttgcgca     <  3:42316‑M1/149‑145 (MQ=255)
                                                                                                                                           aCGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGAc    <  2:152113/149‑1 (MQ=255)
                                                                                                                                            cGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACt   <  1:56272/149‑1 (MQ=255)
                                                                                                                                             gtgtTTacgtggcgtttttggcataagacaaatttatgagcgtttcatcatttcgaagaaatcgtcattggtcttggtcattgccagtttattaatgaggaattccattgcatcgatttcgcccatcgggtgaatgattttgcgcagga  >  1:179431‑M2/1‑6 (MQ=255)
                                                                                                                                             gtgtTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACtt  <  4:42040/149‑1 (MQ=255)
                                                                                                                                              |                                                                                                                                                   
TCCTGCGCAAAATCATTCACCCGATGGGCGAAATCGATGCAATGGAATTCCTCATTAATAAACTGGCAATGACCAAGACCAATGACGATTTCTTCGAAATGATGAAACGCTCATAAATTTGTCTTATGCCAAAAACGCCACGTGTTTACGTGGCGTTTTGCTTTTATATCTGTAATCTTAATGCCGCGCTGGCGATGTTAGGAAAATTCCTGGAATTTGCTGGCATGTTATGCAATTTGCATATCAAATGGTTAATTTTTGCACAGGACTGGTGGGTTTGGAACGGACTT  >  NC_000913/3967561‑3967850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.