mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 34.2% | 38.1 / 31.1 | 38 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 1,231,963 | 0 | T | A | 22.2% | 53.5 / 10.4 | 27 | Y260N (TAT→AAT) | umuC | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| * | NC_000913 | 1,231,956 | 1 | . | G | 20.7% | 67.7 / 24.9 | 29 | coding (771/1269 nt) | umuC | translesion error‑prone DNA polymerase V subunit; DNA polymerase activity |
| * | NC_000913 | 4,479,012 | 0 | A | T | 20.0% | 89.8 / 12.5 | 40 | intergenic (+123/+22) | rraB/yjgM | protein inhibitor of RNase E/GNAT family putative N‑acetyltransferase |
| Marginal new junction evidence (lowest skew 10 of 24 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4530145 | 50 (1.510) | 6 (0.190) | 4/246 | 3.5 | 11.2% | coding (99/1314 nt) | sgcC | putative PTS system EIIC permease component |
| ? | NC_000913 | = 4530173 | 47 (1.490) | coding (71/1314 nt) | sgcC | putative PTS system EIIC permease component | |||||
| * | ? | NC_000913 | 4477260 = | 43 (1.300) | 4 (0.130) | 4/238 | 3.5 | 9.9% | intergenic (+9/+47) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 |
| ? | NC_000913 | 4477291 = | 33 (1.080) | intergenic (+40/+16) | yjgL/argI | SopA‑central‑domain‑like hexapeptide repeat protein/ornithine carbamoyltransferase 1 | |||||
| * | ? | NC_000913 | 3897448 = | 42 (1.270) | 4 (0.130) | 4/242 | 3.5 | 9.3% | intergenic (+9/‑58) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon |
| ? | NC_000913 | 3897501 = | 39 (1.260) | intergenic (+62/‑5) | yieH/cbrB | phosphoenolpyruvate and 6‑phosphogluconate phosphatase/PRK09823 family inner membrane protein, creBC regulon | |||||
| * | ? | NC_000913 | = 3686428 | 32 (0.970) | 4 (0.130) | 4/246 | 3.5 | 10.9% | coding (2746/3474 nt) | bcsC | cellulose synthase subunit |
| ? | NC_000913 | = 3686455 | 35 (1.110) | coding (2719/3474 nt) | bcsC | cellulose synthase subunit | |||||
| * | ? | NC_000913 | 2887966 = | 45 (1.360) | 4 (0.130) | 4/246 | 3.5 | 8.3% | coding (347/735 nt) | cysH | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent |
| ? | NC_000913 | 2888001 = | 45 (1.430) | coding (312/735 nt) | cysH | phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent | |||||
| * | ? | NC_000913 | 2838912 = | 41 (1.240) | 4 (0.130) | 4/240 | 3.5 | 9.1% | coding (353/1011 nt) | ascG | asc operon transcriptional repressor; prpBC operon repressor |
| ? | NC_000913 | 2838963 = | 42 (1.370) | coding (302/1011 nt) | ascG | asc operon transcriptional repressor; prpBC operon repressor | |||||
| * | ? | NC_000913 | = 2805380 | 25 (0.760) | 4 (0.130) | 4/240 | 3.5 | 13.1% | coding (566/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 2805401 | 30 (0.980) | coding (587/1203 nt) | proV | glycine betaine/proline ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 767161 = | 43 (1.300) | 4 (0.130) | 4/242 | 3.5 | 8.5% | coding (1178/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | NC_000913 | 767207 = | 46 (1.480) | coding (1224/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component | |||||
| * | ? | NC_000913 | = 740522 | 30 (0.910) | 4 (0.130) | 4/242 | 3.5 | 10.9% | coding (1016/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding |
| ? | NC_000913 | = 740548 | 37 (1.190) | coding (1042/1419 nt) | phr | deoxyribodipyrimidine photolyase, FAD‑binding | |||||
| * | ? | NC_000913 | = 498344 | 32 (0.970) | 4 (0.130) | 4/244 | 3.5 | 11.1% | coding (290/963 nt) | hemH | ferrochelatase |
| ? | NC_000913 | = 498355 | 34 (1.090) | coding (301/963 nt) | hemH | ferrochelatase | |||||