| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4497944 = | 88 (2.780) | 7 (0.240) | 6/252 | 2.6 | 7.8% | intergenic (+4/‑328) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA |
| ? | NC_000913 | 4497964 = | 83 (2.810) | intergenic (+24/‑308) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4498096‑4497944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA > NC_000913/4497964‑4498105 TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC > 5:139030/1‑149TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC > 6:36351/1‑149TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAACCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC > 6:31530/1‑149TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGAGTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATACTCCTAGAATAATTCCCGGTCATTTGCCC > 4:86970/1‑149 TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCG < 4:41579/148‑1 TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCG < 4:43433/148‑1 TTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAAT > 3:42491/1‑148 TATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAG < 4:42491/149‑1 TATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA < 5:127680/148‑1 CCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA > 1:145368/1‑112 CCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA < 2:145368/112‑1 GTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA > 1:26328/1‑119 GTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA < 2:26328/119‑1 CCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACAGCTCACTTCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATATAAAAGTAACATCA > 3:89318/1‑148 TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4498096‑4497944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA > NC_000913/4497964‑4498105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |