New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4497944 =88 (2.780)7 (0.240) 6/252 2.6 7.8% intergenic (+4/‑328) intB/insC1 pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
?NC_000913 4497964 = 83 (2.810)intergenic (+24/‑308) intB/insC1 pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA
Rejected: Frequency below/above cutoff threshold.

TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498096‑4497944
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA  >  NC_000913/4497964‑4498105
                                                                                                                                                                                                                                                                                                       
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC                                                                                                                                                    >  5:139030/1‑149
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC                                                                                                                                                    >  6:36351/1‑149
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAACCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCC                                                                                                                                                    >  6:31530/1‑149
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGAGTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATACTCCTAGAATAATTCCCGGTCATTTGCCC                                                                                                                                                    >  4:86970/1‑149
  TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCG                                                                                                                                                   <  4:41579/148‑1
  TTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCG                                                                                                                                                   <  4:43433/148‑1
       TTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAAT                                                                                                                                              >  3:42491/1‑148
              TATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAG                                                                                                                                      <  4:42491/149‑1
              TATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA                                                                                                                                       <  5:127680/148‑1
                                                  CCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA                                                                                                                                       >  1:145368/1‑112
                                                  CCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTA                                                                                                                                       <  2:145368/112‑1
                                                                  GTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA                                                                                                                >  1:26328/1‑119
                                                                  GTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCAAATGCCCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAA                                                                                                                <  2:26328/119‑1
                                                                                                                                                   CCGGGAATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACAGCTCACTTCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATATAAAAGTAACATCA  >  3:89318/1‑148
                                                                                                                                                                                                                                                                                                       
TTTTTTATTGAATGTATATAAATAATGAATAACCGCGGATTCTGATAATCCCCCCTGCAGGGAGCGGTAAATAGTAAATACATCAGTTAATACCGTTTGTCTTTTTTAACAAAGAAAATAATCCTAGAATAATTCCCGGGCATTTGCCCGGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4498096‑4497944
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcccgggaATTATTCTAGGATTATTTTCTTTGTTAAAAAAGACAAACGGTATTAACTGATGTATTTACTATTTACCGCTCCCTGCAGGGGGGATTATCAGAATCCGCGGTTATTCATTATTTATATACATTCAATAAAAAAGTAACCTCA  >  NC_000913/4497964‑4498105

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.