mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.9% | 148.5 / 82.7 | 108 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 29 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 80 (0.940) | 9 (0.110) | 9/266 | 6.5 | 9.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 103 (1.290) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 82 (0.960) | 10 (0.130) | 9/266 | 6.5 | 10.0% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 103 (1.290) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 225078 = | NA (NA) | 13 (0.160) | 8/270 | 7.0 | NA | noncoding (1308/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 225100 = | NA (NA) | noncoding (1330/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913 | = 3814427 | 173 (2.030) | 5 (0.060) | 5/268 | 8.2 | 3.0% | intergenic (+40/‑67) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor |
| ? | NC_000913 | = 3814432 | 163 (2.030) | intergenic (+45/‑62) | dut/slmA | deoxyuridinetriphosphatase/nucleoid occlusion factor, anti‑FtsZ division inhibitor | |||||
| * | ? | NC_000913 | = 193453 | 103 (1.210) | 5 (0.060) | 5/264 | 8.2 | 4.7% | intergenic (+24/‑68) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase |
| ? | NC_000913 | = 193478 | 109 (1.380) | intergenic (+49/‑43) | frr/dxr | ribosome recycling factor/1‑deoxy‑D‑xylulose 5‑phosphate reductoisomerase | |||||
| * | ? | NC_000913 | = 2555200 | NA (NA) | 4 (0.050) | 4/264 | 8.7 | NA | noncoding (9/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 2555206 | NA (NA) | noncoding (15/24 nt) | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | = 940750 | 102 (1.200) | 4 (0.050) | 4/264 | 8.7 | 4.1% | intergenic (+30/‑209) | serS/dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A |
| ? | NC_000913 | = 940754 | 93 (1.170) | intergenic (+34/‑205) | serS/dmsA | seryl‑tRNA synthetase/dimethyl sulfoxide reductase, anaerobic, subunit A | |||||
| * | ? | NC_000913 | 164663 = | 102 (1.200) | 4 (0.050) | 4/266 | 8.7 | 4.0% | intergenic (+129/‑67) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| ? | NC_000913 | 164687 = | 97 (1.210) | intergenic (+153/‑43) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase | |||||
| * | ? | NC_000913 | 3873741 = | 120 (1.410) | 5 (0.060) | 4/270 | 8.8 | 4.1% | coding (734/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase |
| ? | NC_000913 | 3873793 = | 119 (1.470) | coding (682/879 nt) | dgoK | 2‑oxo‑3‑deoxygalactonate kinase | |||||
| * | ? | NC_000913 | = 16653 | NA (NA) | 4 (0.050) | 4/270 | 8.8 | NA | noncoding (1267/1345 nt) | IS186 | repeat region |
| ? | NC_000913 | = 16691 | NA (NA) | noncoding (1305/1345 nt) | IS186 | repeat region | |||||