New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1097282	21 (0.180)	26 (0.230)	17/276	11.1	56.0%	intergenic (+453/+283)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
	?	NC_000913	= 1097286	21 (0.190)					intergenic (+457/+279)	ycdU/serX	putative inner membrane protein/tRNA‑Ser
Rejected: Coverage evenness skew score above cutoff.

TCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1097133‑1097282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caactggc‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGG  <  NC_000913/1097286‑1097141                                                                                                                                                                                                                                                                                                           TCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC                                                                                                                                                     >  1:1150958/1‑150             GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  3:500413/150‑1             GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  2:588938/150‑1             GGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  1:762645/150‑1                   TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTGGACA                                                                                                                                    <  1:1134631/148‑1                   TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTGGACA                                                                                                                                    >  2:1134631/1‑148                             GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG                                                                                                                                                       <  2:582145/120‑1                             GAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTG                                                                                                                                                       >  1:582145/1‑120                              AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      <  1:180686/120‑1                              AAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      >  2:180686/1‑120                               AAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          <  1:124499/115‑1                               AAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          >  2:124499/1‑115                                                   TACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGT                                                                                                                                          <  4:446402/110‑1                                                   TACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGT                                                                                                                                          >  3:446402/1‑110                                                               tcTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGC                                                                                                                                              <  1:133286/92‑1                                                               TTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGC                                                                                                                                              >  2:133286/1‑94                                                                       TGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAC                                                                                                                                                         >  3:61068/1‑76                                                                       TGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAAC                                                                                                                                                         <  4:61068/76‑1                                                                          CGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      >  3:52441/1‑76                                                                          CGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      <  4:52441/76‑1                                                                                 GGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACc                                                                                                                                                >  1:39179/1‑73                                                                                 GGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACA                                                                                                                                                <  2:39179/74‑1                                                                                             TCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGT                                                                                                                     <  1:832800/89‑1                                                                                             TCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGT                                                                                                                     >  2:832800/1‑89                                                                                             TCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      <  2:384647/57‑1                                                                                             TCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGG                                                                                                                                                      >  1:384647/1‑57                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        >  4:277480/1‑63                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  3:277480/63‑1                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          >  2:1275871/1‑46                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          <  4:291451/46‑1                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          >  3:291451/1‑46                                                                                                    GCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          <  1:1275871/46‑1                                                                                                      TCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACCGCCAG                                                                                                                                           >  2:300701/1‑58                                                                                                      TCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAG                                                                                                                                           <  1:300701/58‑1                                                                                                        GCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  2:354866/59‑1                                                                                                        GCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        >  1:354866/1‑59                                                                                                            TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          >  2:631872/1‑38                                                                                                            TGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAA                                                                                                                                                          <  1:631872/38‑1                                                                                                                     CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGC                                                                                                                                              <  2:818737/40‑1                                                                                                                     CCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGC                                                                                                                                              >  1:818737/1‑40                                                                                                                            ACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        <  4:82659/39‑1                                                                                                                            ACTGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTTG                                                                                                                                        >  3:82659/1‑39                                                                                                                              TGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTT                                                                                                                                         >  2:498053/1‑36                                                                                                                              TGCGTTCACGGTCTGTCCAACTGGC‑GACAGCCAGTT                                                                                                                                         <  1:498053/36‑1                                                                                                                                       GGTCTGTCCAACTGGCTGTC‑GCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTGGTtatttg              >  4:254762/1‑144                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                          <  2:958480/81‑1                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                          >  1:958480/1‑81                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                            <  1:30147/79‑1                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCC                                                                            >  2:30147/1‑79                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC                                                                                                 <  3:397949/58‑1                                                                                                                                                AACTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC                                                                                                 >  4:397949/1‑58                                                                                                                                                  CTGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGG   >  2:1150958/1‑150                                                                                                                                                   TGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGG  >  4:75172/1‑150                                                                                                                                                   TGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                     <  2:1312021/99‑1                                                                                                                                                   TGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAA                                                     >  1:1312021/1‑99                                                                                                                                                   TGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG                                                                                     >  3:294877/1‑67                                                                                                                                                   TGGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAG                                                                                     <  4:294877/67‑1                                                                                                                                                    GGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAG                                                                                                    <  2:374926/51‑1                                                                                                                                                    GGC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAG                                                                                                    >  1:374926/1‑51                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                          <  1:506148/76‑1                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCC                                                                          >  2:506148/1‑76                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC                                                                                                 >  3:88576/1‑53                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGC                                                                                                 <  4:88576/53‑1                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTG                                                                                                           >  1:151865/1‑43                                                                                                                                                     GC‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTG                                                                                                           <  2:151865/43‑1                                                                                                                                                                                                                                                                                                           TCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1097133‑1097282 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caactggc‑GACAGCCAGTTGGACAGACCGTGAACGCAGTGAGCGGGCTGCCCGCAGGGCGAGCGAAGCGAGTCAATCCCCCCCTCACCGCCATATTTAAAGAAGAGCTCGTACGAAAGTACGGGCTTTTTTTTCGTGTATTGCACACACCGGGG  <  NC_000913/1097286‑1097141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.