| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3252144 | NA (NA) | 6 (0.200) | 6/232 | 2.8 | NA | noncoding (80/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3252155 | NA (NA) | noncoding (91/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
TTCGCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAA > NC_000913/3251997‑3252290 | ttCGCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGAT > 3:1662‑M1/1‑148 (MQ=255) cTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCg > 1:30998/1‑149 (MQ=255) ttAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgct > 5:52037‑M1/1‑138 (MQ=255) aaaaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatc < 1:36387‑M2/149‑4 (MQ=255) aaaaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatc > 2:155161‑M2/1‑146 (MQ=255) aGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc < 6:52037‑M1/149‑20 (MQ=255) ctctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcatca < 7:113507/149‑1 (MQ=255) tctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg > 3:63978/1‑149 (MQ=255) ttAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTatctggtctgcgcgggttatgcaatctattg < 5:52689‑M2/145‑32 (MQ=255) ttAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATGCGCTACGCTTatctggtctgcgcgggttatgcaatctattg > 6:52689‑M2/1‑114 (MQ=255) tgttgtTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcat > 1:75586/1‑125 (MQ=255) tgttgtTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcat < 2:75586/125‑1 (MQ=255) tGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTaa > 7:112701/1‑149 (MQ=255) tCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAtt < 2:36387/149‑1 (MQ=255) tgGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGa < 2:30998/148‑1 (MQ=255) gggCATGAACGCCTTATCTGACAAACACAACATTCTACACTCAATAGATTGCATAACCCGCGCAGACCACCTAAGCCTACCGCATCTGGCGATCTACCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTAATAATTCCTTGaa < 4:1662/148‑1 (MQ=255) ggCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCa < 7:54331/125‑1 (MQ=255) ggCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCa > 8:54331/1‑125 (MQ=255) gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAAc > 8:133481/1‑148 (MQ=255) gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAACGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAAc > 4:133042/1‑148 (MQ=255) tGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa > 7:26925/1‑148 (MQ=255) aCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATAtt > 1:106321/1‑149 (MQ=255) gCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa < 4:63978/149‑1 (MQ=255) aTCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGc < 8:112701/148‑1 (MQ=255) tACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtctgc > 3:92179‑M1/1‑49 (MQ=255) tACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtctgc < 4:92179‑M1/71‑23 (MQ=255) tACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcatt > 1:172979/1‑149 (MQ=255) tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCt < 2:106321/149‑1 (MQ=255) tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTa > 7:87572/1‑75 (MQ=255) tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTa < 8:87572/75‑1 (MQ=255) tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa < 1:91125/119‑1 (MQ=255) tCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa > 2:91125/1‑119 (MQ=255) cAATAGATTGCATAACCCGCGCAGACCAGATaagcgtagcgcatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaa < 5:52689‑M1/145‑115 (MQ=255) cAATAGATTGCATAACCCGCGCAGACCAGATaagcgtagcgcatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaa > 6:52689‑M1/1‑31 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTc > 4:64323/1‑140 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTc < 3:64323/140‑1 (MQ=255) aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgc < 8:26925/149‑1 (MQ=255) aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa < 6:153006/107‑1 (MQ=255) aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa > 5:153006/1‑107 (MQ=255) aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAtt < 5:119347/137‑1 (MQ=255) aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAAtt > 6:119347/1‑137 (MQ=255) tAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaa > 5:7845/1‑148 (MQ=255) aaCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaaaa > 2:92097/1‑149 (MQ=255) aCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaaaa < 6:7845/148‑1 (MQ=255) ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACaa > 3:53351/1‑149 (MQ=255) gcAGACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgta > 3:92179‑M2/1‑22 (MQ=255) gcAGACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgta < 4:92179‑M2/71‑50 (MQ=255) gcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa < 4:53351/149‑1 (MQ=255) gACCAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgcct < 6:52037‑M2/149‑131 (MQ=255) aCCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAtt > 3:7448/1‑147 (MQ=255) gATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgcctttttt > 2:155161‑M1/1‑3 (MQ=255) gATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgcctttttt < 1:36387‑M1/149‑147 (MQ=255) | TTCGCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAA > NC_000913/3251997‑3252290 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |