mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,708,597 | 0 | T | C | 28.6% | 30.1 / 11.5 | 21 | intergenic (‑892/+19) | dppA/proK | dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor/tRNA‑Pro |
| * | NC_000913 | 1,703,251 | 0 | A | T | 27.3% | 30.0 / 12.4 | 22 | intergenic (+17/+17) | add/ydgJ | adenosine deaminase/putative oxidoreductase |
| * | NC_000913 | 1,703,252 | 0 | A | T | 27.3% | 21.3 / 12.4 | 22 | intergenic (+18/+16) | add/ydgJ | adenosine deaminase/putative oxidoreductase |
| * | NC_000913 | 2,525,907 | 0 | G | A | 25.0% | 55.4 / 14.2 | 32 | intergenic (+16/+23) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| * | NC_000913 | 2,525,908 | 0 | C | G | 25.0% | 60.7 / 21.0 | 32 | intergenic (+17/+22) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| * | NC_000913 | 2,525,909 | 0 | T | C | 25.0% | 50.3 / 16.8 | 32 | intergenic (+18/+21) | yfeN/yfeR | putative outer membrane protein/transcriptional regulator of yefH |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.0% | 45.7 / 13.7 | 28 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 303,631 | 0 | A | G | 22.9% | 63.1 / 15.0 | 35 | intergenic (+26/+222) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| * | NC_000913 | 303,632 | 0 | A | T | 22.9% | 63.9 / 11.4 | 35 | intergenic (+27/+221) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| * | NC_000913 | 303,633 | 0 | T | A | 22.2% | 70.5 / 12.1 | 36 | intergenic (+28/+220) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| * | NC_000913 | 303,635 | 0 | C | T | 22.2% | 67.9 / 14.2 | 36 | intergenic (+30/+218) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| * | NC_000913 | 303,636 | 0 | A | T | 22.2% | 68.2 / 11.7 | 36 | intergenic (+31/+217) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| * | NC_000913 | 3,439,588 | 0 | G | C | 21.6% | 118.5 / 26.0 | 51 | intergenic (‑79/+28) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| * | NC_000913 | 3,439,589 | 0 | G | C | 21.6% | 116.0 / 29.4 | 51 | intergenic (‑80/+27) | yhdN/rplQ | DUF1992 family protein/50S ribosomal subunit protein L17 |
| * | NC_000913 | 3,269,969 | 0 | A | C | 21.4% | 55.1 / 13.6 | 28 | intergenic (+367/+247) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 3,269,970 | 0 | A | G | 21.4% | 55.4 / 10.7 | 28 | intergenic (+368/+246) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| * | NC_000913 | 217,037 | 0 | A | T | 21.1% | 73.8 / 17.5 | 38 | intergenic (‑34/+20) | yaeF/proS | putative lipoprotein/prolyl‑tRNA synthetase |
| * | NC_000913 | 217,044 | 0 | A | G | 20.5% | 74.7 / 14.5 | 39 | intergenic (‑41/+13) | yaeF/proS | putative lipoprotein/prolyl‑tRNA synthetase |
| Marginal new junction evidence (lowest skew 10 of 45 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3852844 | 33 (1.060) | 6 (0.210) | 6/222 | 2.7 | 16.4% | intergenic (‑60/+46) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide |
| ? | NC_000913 | = 3852855 | 31 (1.090) | intergenic (‑71/+35) | ilvB/ivbL | acetolactate synthase 2 large subunit/ilvB operon leader peptide | |||||
| * | ? | NC_000913 | 3241195 = | 40 (1.280) | 6 (0.210) | 6/228 | 2.8 | 13.9% | coding (550/552 nt) | ygjV | Imp‑YgjV family inner membrane protein |
| ? | NC_000913 | 3241224 = | 37 (1.270) | coding (521/552 nt) | ygjV | Imp‑YgjV family inner membrane protein | |||||
| * | ? | NC_000913 | 2871564 = | 23 (0.740) | 5 (0.170) | 5/228 | 3.1 | 16.5% | coding (217/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase |
| ? | NC_000913 | 2871614 = | 29 (0.990) | coding (167/480 nt) | ispF | 2C‑methyl‑D‑erythritol 2,4‑cyclodiphosphate synthase | |||||
| * | ? | NC_000913 | 2850545 = | 38 (1.220) | 5 (0.170) | 5/232 | 3.1 | 13.1% | intergenic (‑110/‑102) | hycA/hypA | regulator of the transcriptional regulator FhlA/protein involved in nickel insertion into hydrogenases 3 |
| ? | NC_000913 | 2850575 = | 30 (1.010) | intergenic (‑140/‑72) | hycA/hypA | regulator of the transcriptional regulator FhlA/protein involved in nickel insertion into hydrogenases 3 | |||||
| * | ? | NC_000913 | 2680032 = | 28 (0.900) | 5 (0.170) | 5/232 | 3.1 | 16.5% | coding (2714/3282 nt) | yphG | DUF4380 domain‑containing TPR repeat protein |
| ? | NC_000913 | 2680053 = | 24 (0.810) | coding (2693/3282 nt) | yphG | DUF4380 domain‑containing TPR repeat protein | |||||
| * | ? | NC_000913 | 2574924 = | 37 (1.190) | 5 (0.170) | 5/232 | 3.1 | 11.9% | coding (80/702 nt) | eutQ | RmlC‑like cupin domain protein |
| ? | NC_000913 | 2574962 = | 39 (1.310) | coding (42/702 nt) | eutQ | RmlC‑like cupin domain protein | |||||
| * | ? | NC_000913 | = 937227 | NA (NA) | 5 (0.170) | 5/228 | 3.1 | NA | noncoding (4/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 937259 | NA (NA) | noncoding (36/36 nt) | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913 | 2877882 = | 27 (0.860) | 5 (0.170) | 5/234 | 3.2 | 18.2% | intergenic (+264/+687) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | NC_000913 | 2877918 = | 19 (0.630) | intergenic (+300/+651) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | NC_000913 | = 3299608 | 31 (0.990) | 4 (0.140) | 4/224 | 3.4 | 13.5% | coding (308/444 nt) | yhbP | UPF0306 family protein |
| ? | NC_000913 | = 3299630 | 23 (0.800) | coding (286/444 nt) | yhbP | UPF0306 family protein | |||||
| * | ? | NC_000913 | 2060677 = | 38 (1.220) | 5 (0.170) | 4/226 | 3.4 | 13.1% | coding (238/951 nt) | cbl | ssuEADCB/tauABCD operon transcriptional activator |
| ? | NC_000913 | 2060722 = | 31 (1.070) | coding (193/951 nt) | cbl | ssuEADCB/tauABCD operon transcriptional activator | |||||