New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	235658 =	49 (1.450)	7 (0.220)	7/250	2.7	14.0%	coding (345/468 nt)	rnhA	ribonuclease HI, degrades RNA of DNA‑RNA hybrids
	?	NC_000913	235684 =	41 (1.310)					coding (319/468 nt)	rnhA	ribonuclease HI, degrades RNA of DNA‑RNA hybrids
Rejected: Frequency below/above cutoff threshold.

AACTTCAACTTGGTAGCCTGTATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCTTTTAA  >  NC_000913/235538‑235828                                                                                                                                                   |                                                                                                                                                 tgagtaccgacagccagtatgtccgccagggtatcacccagtggatccataactggaaaaaacgtggctggaaaaccgcagacaaaaaaccagtaaaaaatgtcgatctctggcaacgtcTTGATGCTGCCCCAATGCAGCATCAAGa                                                                                                                                                 >  4:105983‑M1/121‑148 (MQ=255)    ttCAACTTGGTAGCCTGTATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGtt                                                                                                                                             >  3:77109/1‑149 (MQ=255)        aCTTGGTAGCCTGTATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCa                                                                                                                                         <  8:9945/149‑1 (MQ=255)                gCCTGTATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGa                                                                                                                                 >  3:88386/1‑149 (MQ=255)                     tATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGa                                                                                                                                                 <  8:32460/128‑1 (MQ=255)                     tATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGa                                                                                                                                                 >  7:32460/1‑128 (MQ=255)                     tATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttt                                                                                                                            >  1:42518/1‑149 (MQ=255)                     tATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACAttt                                                                                                                            >  5:21550/1‑149 (MQ=255)                           ccAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTa                                                                                                                        <  6:21550/147‑1 (MQ=255)                               tgtgGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtt                                                                                                                  >  2:26452/1‑149 (MQ=255)                                 atcacccagtggatccataactggaaaaaacgtggctggaaaaccgcagacaaaaaaccagtaaaaaatgtcgatctctggcaacgtcttgatgctgccccaatgcagcatcaaGACGTTGCCAGAGATCGACATTTTTTa                                                                                                                        <  8:101283‑M2/27‑1 (MQ=255)                                 atcacccagtggatccataactggaaaaaacgtggctggaaaaccgcagacaaaaaaccagtaaaaaatgtcgatctctggcaacgtcttgatgctgccccaatgcagcatcaaGACGTTGCCAGAGATCGACATTTTTTa                                                                                                                        >  7:101283‑M2/115‑141 (MQ=255)                                   ggATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtttttt                                                                                                              <  7:23673/149‑1 (MQ=255)                                   ggATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGtttttt                                                                                                              <  8:138061/149‑1 (MQ=255)                                   ggATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGttttt                                                                                                               <  4:77109/148‑1 (MQ=255)                                        cATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATc                                                                                                                                   <  7:118482/123‑1 (MQ=255)                                        cATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATc                                                                                                                                   >  8:118482/1‑123 (MQ=255)                                        cATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCt                                                                                                          <  1:10377/148‑1 (MQ=255)                                         aTCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGc                                                                                                        >  8:79154/1‑149 (MQ=255)                                          tCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCg                                                                                                       >  8:85852/1‑149 (MQ=255)                                            gccgcGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCTGCATCAAGACGTTGCCAGAGATCGACATTTTTTAc                                                                                                                       <  7:139195/131‑1 (MQ=255)                                            gccgcGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGt                                                                                                     >  5:65123/1‑149 (MQ=255)                                                  gCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCa                                                                                               <  2:42518/149‑1 (MQ=255)                                                               catcaCAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTc                                                                                  >  3:53050/1‑149 (MQ=255)                                                                   acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTa                                                                                                                        >  4:82497/1‑107 (MQ=255)                                                                   acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTa                                                                                                                        <  3:82497/107‑1 (MQ=255)                                                                   acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGt                                                                              >  1:103995/1‑149 (MQ=255)                                                                   acaGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGt                                                                              <  6:65123/149‑1 (MQ=255)                                                                     tggaaaaccgcagacaaaaaaccagtaaaaaatgtcgatctctggcaacgtcTTGATGCTGCATTGGGGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTgg                                                                                                                    <  5:51105‑M1/57‑1 (MQ=255)                                                                     tggaaaaccgcagacaaaaaaccagtaaaaaatgtcgatctctggcaacgtcTTGATGCTGCATTGGGGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTgg                                                                                                                    >  6:51105‑M1/53‑109 (MQ=255)                                                                      gCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTAt                                                                           <  4:88386/149‑1 (MQ=255)                                                                             ttttCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCGCAATGCAGCATCAAGCCGTTGCCAGCGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCa                                                                    >  7:116873/1‑149 (MQ=255)                                                                                  cGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTgg                                                                <  7:79154/148‑1 (MQ=255)                                                                                          ccagtaaaaaatgtcgatctctggcaacgtcttgatgctgccccaatgcagcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCa                                                                                               <  5:51105‑M2/52‑1 (MQ=255)                                                                                          ccagtaaaaaatgtcgatctctggcaacgtcttgatgctgccccaatgcagcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCa                                                                                               >  6:51105‑M2/58‑109 (MQ=255)                                                                                           ggCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCt                                                      <  8:108750/149‑1 (MQ=255)                                                                                              taaaaaatgtcgatctctggcaacgtcTTGATGCTGCATTGGGGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGAt                                                           <  8:101283‑M1/114‑1 (MQ=255)                                                                                              taaaaaatgtcgatctctggcaacgtcTTGATGCTGCATTGGGGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGAt                                                           >  7:101283‑M1/28‑141 (MQ=255)                                                                                              aTGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGc                                                   <  7:85852/149‑1 (MQ=255)                                                                                                  ccTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGAc                                               <  4:53050/149‑1 (MQ=255)                                                                                                        aCCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTg                                         <  1:26452/149‑1 (MQ=255)                                                                                                                ccattTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCgg                                 >  2:107067/1‑149 (MQ=255)                                                                                                                  atttgatttgATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCg                                  <  1:81450/146‑1 (MQ=255)                                                                                                                  atttgatttgATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCg                                  >  2:81450/1‑146 (MQ=255)                                                                                                                   tttgatttgaTGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGc                                       >  6:22563/1‑140 (MQ=255)                                                                                                                   tttgatttgaTGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGc                                       <  5:22563/140‑1 (MQ=255)                                                                                                                      gatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCa                                                                                <  8:79854/96‑1 (MQ=255)                                                                                                                      gatttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCa                                                                                >  7:79854/1‑96 (MQ=255)                                                                                                                       tcttgatgctgcattggggcagcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCa                           >  4:105983‑M2/29‑148 (MQ=255)                                                                                                                        tttgatGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCaa                          >  8:126628/1‑148 (MQ=255)                                                                                                                         ttgatgctgcattggggcagcatcaaGACGTTGCCAGATATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCaaaa                        >  3:7854‑M2/27‑149 (MQ=255)                                                                                                                           gatgctgcattggggcagcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAAt                       <  3:105983‑M2/124‑1 (MQ=255)                                                                                                                                 GCCCCAATGCAGCATCAAGACGTTGACAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCCGCCAc                                                                                          <  3:55210‑M1/75‑1 (MQ=255)                                                                                                                                     ccaTGCAGCATCAAGACGTTTCCAGAGATCTACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGGTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAAt            <  8:116873/147‑1 (MQ=255)                                                                                                                                           agcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCtt      <  7:126628‑M2/141‑1 (MQ=255)                                                                                                                                            gcatcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCttt     >  7:108534‑M2/8‑149 (MQ=255)                                                                                                                                               tcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTc        <  2:2269‑M2/139‑1 (MQ=255)                                                                                                                                               tcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTc        >  1:2269‑M2/5‑143 (MQ=255)                                                                                                                                               tcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCTTTTaa  <  2:103995‑M2/145‑1 (MQ=255)                                                                                                                                               tcaaGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCTTTTaa  >  1:170187‑M2/5‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                 AACTTCAACTTGGTAGCCTGTATCTTCCAGTGTGGGATTCATCGCCGCGGCACGAGCCAGTTCATCACAGCGTTCGTTTTCCGGGTGTCCGGCATGGCCTTTAACCCATTCCCATTTGATTTGATGCTGCCCCAATGCAGCATCAAGACGTTGCCAGAGATCGACATTTTTTACTGGTTTTTTGTCTGCGGTTTTCCAGCCACGTTTTTTCCAGTTATGGATCCACTGGGTGATACCCTGGCGGACATACTGGCTGTCGGTACTCAAAATGACTTCGCAATGTTCTTTTAA  >  NC_000913/235538‑235828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.