New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 1794268 = | 42 (1.030) | 5 (0.130) | 3/250 | 5.2 | 11.4% | coding (885/981 nt) | btuC | vitamin B12 ABC transporter permease |
? | NC_000913 | 1794318 = | 38 (0.990) | coding (835/981 nt) | btuC | vitamin B12 ABC transporter permease | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
TTCCCGGCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1794326‑1794268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGACCAATAAAGCCGATAGCACCCGCCAGCGCCACACTGACGCCAACCATCCAGCCGGTCGCTGCCACCAGCACATTGCGC > NC_000913/1794318‑1794460 TTCCCGGCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGACCAATAAAGCCGATAGCACCCGC > 2:30599/1‑147 GCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAACCCACACAACCGGAGAATATGGGGGATCACCAGA > 7:161320/1‑118 GCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGA > 7:163487/1‑118 GCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGA < 8:161320/118‑1 GCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGA < 8:163487/118‑1 GCGCGCAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGACCAATAAAGCCGATAGCACCCGCCAGCGCCACACTGACGCCAACCATCCAGCCGGTCGCTGCCACCAGCACATTGCGC < 6:171848/149‑1 TTCCCGGCTGCGCGCTGGCAGGGGCGAGCGCATTGCTGCTGGCCGATATTGTAGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1794326‑1794268 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcgcgcAGCCGGGAAGTAATACGCGATGATCGGTTAAACCACACAACCGGAGAATATGGGGGATCACCAGACCAATAAAGCCGATAGCACCCGCCAGCGCCACACTGACGCCAACCATCCAGCCGGTCGCTGCCACCAGCACATTGCGC > NC_000913/1794318‑1794460 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |