New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4426591	34 (1.130)	4 (0.150)	6/196	2.2	10.8%	intergenic (+34/+37)	rplI/yjfZ	50S ribosomal subunit protein L9/uncharacterized protein
	?	NC_000913	= 4426592	36 (1.360)					intergenic (+35/+36)	rplI/yjfZ	50S ribosomal subunit protein L9/uncharacterized protein
Rejected: Frequency below/above cutoff threshold.

ATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4426534‑4426591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgccgaccaATGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTGTTCGCCA  <  NC_000913/4426592‑4426482                                                                                                                                                                           ATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAA                                                                              <  1:57564/93‑1 ATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAA                                                                              >  2:57564/1‑93     TAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCT                  >  2:16502/1‑149              TAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTG         <  1:16502/149‑1                                               AAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTGTTCGC    <  5:89055/121‑1                                               AAACGCCGACCATTGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTGTTCGC    >  6:89055/1‑121                                                      GACCAATGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTAAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTGTTCGCCA  >  6:171075/1‑116                                                                                                                                                                           ATCGTAAACGTAGTAGCTGAATAATTCGTTATTCAACGAGACGTAAAAACGCCGACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4426534‑4426591 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaacgccgaccaATGGTCGGCGTTTTTACGTCTCGTTGAATAACGAATTATTCAGCTACTACGTTTACGATCACTTTCGCGAATACTTCGCTGTGAACCTGGAAGCTCACTTCGTGTTCGCCA  <  NC_000913/4426592‑4426482

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.