mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 27.1% | 139.6 / 56.5 | 86 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 40 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 61 (0.580) | 28 (0.300) | 27/246 | 4.0 | 30.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 73 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 59 (0.560) | 22 (0.240) | 19/246 | 5.8 | 26.6% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 69 (0.740) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 3950444 = | 108 (1.030) | 13 (0.130) | 12/264 | 8.5 | 11.0% | intergenic (+24/‑63) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein |
| ? | NC_000913 | 3950470 = | 108 (1.080) | intergenic (+50/‑37) | ilvL/ilvX | ilvG operon leader peptide/uncharacterized protein | |||||
| * | ? | NC_000913 | = 1209618 | 86 (0.820) | 20 (0.210) | 5/248 | 11.5 | 18.4% | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | NC_000913 | 2471897 = | 101 (1.080) | pseudogene (226/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 2906594 = | 114 (1.090) | 5 (0.050) | 5/252 | 11.6 | 5.0% | intergenic (+11/+49) | ygcG/eno | TPM domain protein, putative phosphatase/enolase |
| ? | NC_000913 | 2906624 = | 85 (0.890) | intergenic (+41/+19) | ygcG/eno | TPM domain protein, putative phosphatase/enolase | |||||
| * | ? | NC_000913 | = 4045647 | 147 (1.400) | 5 (0.050) | 5/256 | 11.7 | 3.6% | intergenic (+18/+23) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase |
| ? | NC_000913 | = 4045653 | 134 (1.390) | intergenic (+24/+17) | yihF/yihG | DUF945 family protein/inner membrane protein, inner membrane acyltransferase | |||||
| * | ? | NC_000913 | = 1714998 | 83 (0.790) | 5 (0.050) | 5/258 | 11.8 | 6.0% | intergenic (+16/+28) | gstA/pdxY | glutathionine S‑transferase/pyridoxamine kinase |
| ? | NC_000913 | = 1715004 | 80 (0.820) | intergenic (+22/+22) | gstA/pdxY | glutathionine S‑transferase/pyridoxamine kinase | |||||
| * | ? | NC_000913 | 1657887 = | NA (NA) | 5 (0.050) | 5/262 | 11.9 | NA | intergenic (+17/‑182) | ynfD/ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic |
| ? | NC_000913 | 1657910 = | NA (NA) | intergenic (+40/‑159) | ynfD/ynfE | DUF1161 family periplasmic protein/putative selenate reductase, periplasmic | |||||
| * | ? | NC_000913 | 281896 = | 113 (1.080) | 7 (0.070) | 5/262 | 11.9 | 6.0% | coding (88/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| ? | NC_000913 | 281923 = | 111 (1.120) | coding (61/1155 nt) | yagA | CP4‑6 prophage; putative DNA‑binding transcriptional regulator | |||||
| * | ? | NC_000913 | 951207 = | 109 (1.040) | 5 (0.050) | 5/266 | 12.0 | 4.7% | intergenic (‑127/+65) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 |
| ? | NC_000913 | 951233 = | 99 (0.980) | intergenic (‑153/+39) | pflA/pflB | pyruvate formate‑lyase 1‑activating enzyme; [formate‑C‑acetyltransferase 1]‑activating enzyme; PFL activase/formate C‑acetyltransferase 1, anaerobic; pyruvate formate‑lyase 1 | |||||