| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 101111 = | 94 (0.930) | 5 (0.050) | 5/268 | 11.5 | 5.5% | coding (347/1476 nt) | murC | UDP‑N‑acetylmuramate:L‑alanine ligase |
| ? | NC_000913 | 101148 = | 83 (0.860) | coding (384/1476 nt) | murC | UDP‑N‑acetylmuramate:L‑alanine ligase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCAAACGCGCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/101260‑101111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaCGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAGCAGATGA > NC_000913/101148‑101294 aCAAACGCGCATGAACCCCCGCCGCGTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGC < 6:118502/148‑1CCAAACGCGCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGAAGAAAACGC < 5:72547/149‑1 CAAACGCGCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA < 5:261370/149‑1 GCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA < 3:388565/142‑1 GCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA > 4:388565/1‑142 CCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA < 1:35955/134‑1 CCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA > 2:35955/1‑134 CCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGG > 8:131618/1‑123 CCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGG < 7:131618/123‑1 CGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAA < 3:109206/111‑1 CGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAA > 4:109206/1‑111 GTTCCGGCAATGGCGATGCCATGACGAAAACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGG > 7:382134/1‑149 AACGCACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAGCAG < 2:14501/149‑1 GCACGGCAAAACGACAACCCCCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAGCAGATG > 5:249176/1‑149 CACGGCAAACCGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAGCAGATGA < 6:261370/149‑1 ACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAG > 6:243077/1‑141 ACGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAG < 5:243077/141‑1 CCAAACGCGCATGAACCCCCGCCGCTTTTACCAGCCCGCCGTTAACGAAGGTTGGGTCGAGCCCCGCTTCTGCGTAGATGCTGGAAACCATCGCGGTGGTTGTCGTTTTGCCGTGCGTTCCGGCAATGGCGATGCCATGACGAAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/101260‑101111‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaCGGCAAAACGACAACCACCGCGATGGTTTCCAGCATCTACGCAGAAGCGGGGCTCGACCCAACCTTCGTTAACGGCGGGCTGGTAAAAGCGGCGGGGGTTCATGCGCGTTTGGGGCATGGTCGGTACCTGATTGCCGAAGCAGATGA > NC_000913/101148‑101294 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |