| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3269728 | 121 (1.200) | 6 (0.060) | 6/266 | 10.8 | 4.9% | noncoding (7/98 nt) | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3269739 | 120 (1.250) | noncoding (18/98 nt) | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTACGACCTTTTAAATGCAATATAGACTTAATAACTTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3269578‑3269728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCA < NC_000913/3269739‑3269593 TTACGACCTTTTAAATGCAATATAGACTTAATAACTTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTG < 6:96823/149‑1 ATAACTTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCG < 3:321184/148‑1 TACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTT > 3:163692/1‑142 TACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTT < 4:163692/142‑1 TTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATAAGCGTAGCGCATCAGGCATTTTTG > 1:203041/1‑123 TTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGATAAGCGTAGCGCATCAGGCATTTTTG < 2:203041/123‑1 gcggATGCCTGATAAGCGTAGCTCATCAGGCATTTTTGCGGTTGACATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATATACTTTGTAAGAAGTTATTAA < 6:196846/144‑1 GCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAG‑TTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATT < 7:137309/139‑1 GCCTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAG‑TTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATT > 8:137309/1‑139 CTGATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAAT < 2:427308/118‑1 ATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCA < 1:192282/149‑1 ATAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCA > 4:35405/1‑149 TTACGACCTTTTAAATGCAATATAGACTTAATAACTTCTTACAAAGTCTATTATTAATACCGTAGATATTTATTCATCTTACCCTGTGCACCAAAAGCAAAAACTCACTGACGCGGGTTTGAAACTGATGGCAACCGCAAAAATGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3269578‑3269728‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatAAGCGTAGCGCATCAGGCATTTTTGCGGTTGCCATCAGTTTCAAACCCGCGTCAGTGAGTTTTTGCTTTTGGTGCACAGGGTAAGATGAATAAATATCTACGGTATTAATAATAGACTTTGTAAGAAGTTATTAAGTCTATATTGCA < NC_000913/3269739‑3269593 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |