New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4474083 =	38 (1.180)	4 (0.140)	4/226	3.4	11.5%	intergenic (‑30/‑41)	bdcA/bdcR	c‑di‑GMP‑binding biofilm dispersal mediator protein/transcriptional repressor for divergent bdcA
	?	NC_000913	4474127 =	27 (0.920)					coding (4/594 nt)	bdcR	transcriptional repressor for divergent bdcA
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CACTGACAGCATCGAAACCTTTTTGGTGAAAAAGCACTTTTGCCGCAGAGATTGCCTGCTCAGGAGCGAAACGTCTGGGACGACCTGGAACGCGAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4474238‑4474083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttgtaatgGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAAC  >  NC_000913/4474127‑4474270                                                                                                                                                                                                                                                                                                              CACTGACAGCATCGAAACCTTTTTGGTGAAAAAGCACTTTTGCCGCAGAGATTGCCTGCTCAGGAGCGAAACGTCTGGGACGACCTGGAACGCGAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTT                                                                                                                                                         >  1:128690/1‑149       CAGCATCGAAACCTTTTTGGTGAAAAAGCACTTTTGCCGCAGAGATTGCCTGCTCAGGAGCGAAACGTCTGGGACGACCTGGAACGCGAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAAT                                                                                                                                                   <  6:139471/149‑1                                                                                              GAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCT                                                                                               <  5:4029/114‑1                                                                                              GAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCT                                                                                               >  6:4029/1‑114                                                                                                                CCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGCCGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGC                                          >  5:144608/1‑149                                                                                                                 CATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCT                                         >  5:7182/1‑149                                                                                                                                                   TTTTGTAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTA       <  5:139471/149‑1                                                                                                                                                        TAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAAC  <  5:162325/149‑1                                                                                                                                                        TAATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAAC  >  6:153149/1‑149                                                                                                                                                         AATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGA                  <  1:73488/132‑1                                                                                                                                                         AATGGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGA                  >  2:73488/1‑132                                                                                                                                                                                                                                                                                                              CACTGACAGCATCGAAACCTTTTTGGTGAAAAAGCACTTTTGCCGCAGAGATTGCCTGCTCAGGAGCGAAACGTCTGGGACGACCTGGAACGCGAGATTGTTTTTTAGTGACCATTACAAAACCTGTTGACAGAAAGTTAAAACAGTTTTGTAATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4474238‑4474083 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gttttgtaatgGTCACTAAAAAACAATCTCGCGTTCCAGGTCGTCCCAGACGTTTCGCTCCTGAGCAGGCAATCTCTGCGGCAAAAGTGCTTTTTCACCAAAAAGGTTTCGATGCTGTCAGTGTTGCTGAAGTTACTGATTATCTTGGTATTAAC  >  NC_000913/4474127‑4474270

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.