Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,296,0600CT26.4% 156.8 / 69.2 110intergenic (+266/+376)gltP/yjcOglutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein
Reads supporting (aligned to +/- strand):  ref base C (40/41);  new base T (17/12);  total (57/53)
Fisher's exact test for biased strand distribution p-value = 5.16e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.13e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 111 total aligned reads displayed.

TCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTAACGCGTCTTATCAGGCCT  >  NC_000913/4295913‑4296208
                                                                                                                                                   |                                                                                                                                                     
tCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGc                                                                                                                                                     <  3:358359/150‑1 (MQ=17)
    aTAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa                                                                                                                                                 <  3:135348/150‑1 (MQ=17)
     tAAGGCTTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt                                                                                                                                                <  1:56955/150‑1 (MQ=17)
     tAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                                                                                <  3:238309/150‑1 (MQ=17)
      aaGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCCCATCCGACATCAATGCCTgctt                                                                                                                                               >  4:309231/1‑147 (MQ=11)
         gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                            >  1:279552/1‑150 (MQ=17)
         gCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGa                                                                                                                                            >  1:360105/1‑150 (MQ=17)
             ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGGAATGGACGCCCGATGCGACggc                                                                                                                                        >  4:401225/1‑148 (MQ=11)
              tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAcgcggcaagc                                                                                                                                       <  1:762069/150‑7 (MQ=255)
              tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                                                                                       <  3:332784/150‑1 (MQ=32)
                 gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGcc                                                                                                                                    >  3:410015/1‑150 (MQ=25)
                 gCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTgac                                                                                                                                    >  3:169287/1‑148 (MQ=18)
                  ccGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGCCAGCGCAATAGCCTGCTTTAGCGTGACATTGTGTGTCGGATACGGCGTTTACGCCGCATCCGACATAAATGCGCGCCGCGACGCTTTcct                                                                                                                                   >  1:170985/1‑149 (MQ=11)
                   cGCCTCTGACACCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAACAGCCTCATTCAGCGTGATTTTGTAGGTCGGATCAGGCGCCTACGCCGCAGCCGTCATCATCGCCTGATGCGACGCTTGCcgc                                                                                                                                  <  2:155052/150‑1 (MQ=11)
                   cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATAAGACGcggcaagc                                                                                                                                  >  2:522659/1‑143 (MQ=11)
                   cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                                  <  2:861151/150‑1 (MQ=35)
                   cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCcgc                                                                                                                                  >  4:255330/1‑150 (MQ=25)
                   cGCATCCCTCATCAACGCCTGATCCGACGCTTACCGCGTCGTATCAGGCTTTCGCGAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCcgc                                                                                                                                  <  2:1079567/150‑1 (MQ=11)
                     cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCt                                                                                                                                                   <  2:635401/131‑1 (MQ=17)
                     cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt                                                                                                                                                   >  1:635401/1‑131 (MQ=33)
                          gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGAt                                                                                                                                                <  1:282696/129‑1 (MQ=18)
                          gACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGAt                                                                                                                                                >  2:282696/1‑129 (MQ=33)
                            cccgatcGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTTCGCCTGTCAGCGCAATGGCCTGCATCGGCGTGATTTCGTAGGTCCGATAAGGCGCCCACGCCGCCTCCGATATCATCGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                         <  2:584026/144‑1 (MQ=2)
                            cATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                         <  2:644948/150‑1 (MQ=39)
                            cATAAACGCCTGATGCGACGCTTAACGCGTCTTATCCGGCCTACGCCAGACCGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCa                                                                                                                         >  1:394117/1‑150 (MQ=255)
                              tCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAgg                                                                                                                       <  1:516458/150‑1 (MQ=39)
                               acaCGCCTGATGCGACGCTTACCGCGCCGTACCAGGCCTACGCGAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCTCATCCGACATCAATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                      <  4:231125/148‑1 (MQ=11)
                                  cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                   <  2:1025454/150‑1 (MQ=38)
                                    ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGa                                                                                                                                                 >  1:187679/1‑118 (MQ=18)
                                     cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatct                                                                                                                >  4:306316/1‑147 (MQ=17)
                                     cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCGTATCAGGCCTatct                                                                                                                >  3:317150/1‑147 (MQ=12)
                                     cTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc                                                                                                                <  3:458808/150‑1 (MQ=39)
                                     cTGATGCGACGCCTAACGCGTCTTATCAGGCCTACGCCAGACCGCGCAATAGCCTGATTTAGCGTGATTTTGTGGGGCGGATAGGGGGTTTCCGCCGCGTCCGGCGTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGc                                                                                                                <  2:618435/150‑1 (MQ=11)
                                     cTGATAAGACGCGTTAAGCGTCGCATCAGGCCTCCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACTTCAACGCCTGACGCGACGCTTGCCGAGTTTTATCAGGTCTACGc                                                                                                                >  2:91502/1‑150 (MQ=11)
                                      tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                                                                               >  2:772214/1‑146 (MQ=9)
                                      tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctt                                                                                                               >  4:16165/1‑146 (MQ=9)
                                       gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCACTAGCCTGACTTAGAGTGATTTAGTTGGTTTCAGAAGGCGTTTCCGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa                                                                                                              <  3:171555/150‑1 (MQ=14)
                                       gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTatctta                                                                                                              >  3:228104/1‑145 (MQ=2)
                                           ctaCGCTTAACGCGTCTCATCAGCCCCACGCCACACAGCCCAACTGCCTGACTTCGCGTGATTTAGTGGGTCGGGTAAGGGATATCCGCCGCGTCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa                                                                                                          <  2:1138646/148‑1 (MQ=11)
                                                 ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa                                                                                                    >  4:135348/1‑150 (MQ=38)
                                                   gcggcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa                                                                                                  <  4:183697/147‑1 (MQ=38)
                                                   cccgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTGCGCGTGATTTTGTGGGTCGGATAAGGCGTTTACGCCGCATCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATa                                                                                                  <  2:809223/148‑1 (MQ=255)
                                                     cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc                                                                                                <  3:39706/150‑1 (MQ=39)
                                                     cacatCTTATCACGCCTACGCCAGACAGCTCAATAGCCTGATTTAGCGTTATTTTGTAGGTCAGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc                                                                                                <  3:77437/146‑1 (MQ=11)
                                                          cTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt                                                                                           >  1:536760/1‑150 (MQ=39)
                                                             aTCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTa                                                                                        >  3:374098/1‑150 (MQ=38)
                                                               cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCtt                                                                                                                                       <  1:525660/101‑1 (MQ=32)
                                                                      aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                      <  2:777083/111‑1 (MQ=25)
                                                                      aCGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                      >  1:777083/1‑111 (MQ=40)
                                                                        gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCt                                                                                                                                                   <  1:544092/80‑1 (MQ=35)
                                                                        gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGCCGTCTACGCCGCATCCGACATCACCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTg                                                                             >  1:123806/1‑150 (MQ=255)
                                                                         ccAGACAGCGCTCTTGCCTGATTTGGCGTTCTTTTGTTGTTCTTTTAGGGTGTTTATGCCGCATCAGGTATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt                                                                            <  4:14095/150‑1 (MQ=11)
                                                                          cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                        >  1:214364/1‑105 (MQ=25)
                                                                          cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAg                                                                                                                        <  2:214364/105‑1 (MQ=25)
                                                                             aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCACCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt                                                                        <  3:73257/150‑1 (MQ=38)
                                                                             aCAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGCTTTTGTatcc                                                                        >  2:1055695/1‑147 (MQ=255)
                                                                               aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTa                                                                                                                   >  2:321471/1‑105 (MQ=40)
                                                                               aGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg                                                                      >  2:752133/1‑150 (MQ=37)
                                                                                ccgcAATAGCCCGATTTAGCGTGATTTTGTAAGTCGGATAAGGCATTTACGCCGCATCCGGCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCgg                                                                     <  4:242318/149‑1 (MQ=255)
                                                                                  gcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt                                                                                           >  1:858316/1‑126 (MQ=39)
                                                                                       aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                      <  1:1008871/94‑1 (MQ=255)
                                                                                         ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGt                                                            <  1:1105320/150‑1 (MQ=39)
                                                                                         ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGCCAGCGCTTTAGCCTGCTATCGCTTGACTCCGTAGATCGGATagatcgg                                                            >  2:986377/1‑144 (MQ=14)
                                                                                          cTGATTCACCGTGATTTTCTAGGTCGGTCACGGCGTTTACCCCGCCTCCGCCCTCCCCACCTGATGCGACGCGTGACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGtt                                                           <  4:489309/150‑1 (MQ=11)
                                                                                                tAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc                                                     <  3:364605/150‑1 (MQ=38)
                                                                                                     tgaaattGTAGGTAGGAAAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTAGCCACGTCTTCTCAGGCATACGCCCGACAGCGCAATAGCCTGAATTAGCGTGATTTTGTAGGTCGGATCAAGCGTATATGCCGAATc                                                >  2:345305/6‑150 (MQ=11)
                                                                                                       aTTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg                                              <  3:275907/150‑1 (MQ=39)
                                                                                                                gTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAGCTAGCGTCATTTTGTAGGTCGGATACGGCGTGTACGCCGCATCCGACATCGAcc                                     >  2:1062664/1‑149 (MQ=11)
                                                                                                                 tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc                                                                                                               <  2:61898/75‑1 (MQ=255)
                                                                                                                 tCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGcc                                                                                                               >  1:61898/1‑75 (MQ=255)
                                                                                                                 gcgggtcaGGCGTATACGCCGGGCCAGGTATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGc                                    <  2:1121754/143‑1 (MQ=11)
                                                                                                                 gcGGGTAAGGGGTGTACGCCGCCTCCGACAGGAACGGCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGc                                    <  2:506304/149‑1 (MQ=11)
                                                                                                                      tAAGGCGTGTACGCCGCATCCGACATCAACGCCTGATGCGACGCGTGCCGCGTCGTATCATGCCTACCCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAGAAGGCGTTTGTTCCGCAGCCGGCATCGATGCGTGag                               >  2:687754/1‑149 (MQ=11)
                                                                                                                         ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGc                                                                                                                                     <  2:402678/45‑1 (MQ=255)
                                                                                                                         ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                              <  3:156780/100‑1 (MQ=255)
                                                                                                                         ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt                                                                              >  4:156780/1‑100 (MQ=255)
                                                                                                                         ggCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg                            >  4:238309/1‑150 (MQ=38)
                                                                                                                          gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa                           >  1:568406/1‑150 (MQ=39)
                                                                                                                          gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGa                           >  2:58691/1‑150 (MQ=25)
                                                                                                                          gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTCTGTAGGTCGGATACGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGa                           >  2:503304/1‑150 (MQ=255)
                                                                                                                          gCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACCCCAGCCAGCGCTATAGCCTGCTTGCGCGTGACACTGTGGGTCGGATCCGGCGGATAGGCCGCGCGCGGCGTCAGCGGCGGATGCGa                           >  2:782450/1‑150 (MQ=2)
                                                                                                                                  gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCAGCACAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCCTTTATGCCGCAACCGACATCAACGCCTGATGCGAGGC‑tgtac                  >  4:331897/1‑146 (MQ=11)
                                                                                                                                  gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGt                                                                            >  2:179908/1‑93 (MQ=39)
                                                                                                                                  gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa                                                                    <  2:586686/101‑1 (MQ=35)
                                                                                                                                  gccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGa                                                                    >  1:586686/1‑101 (MQ=38)
                                                                                                                                   ccgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGttt                                                          <  3:173442/110‑1 (MQ=38)
                                                                                                                                    cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc                                                     <  4:189543/114‑1 (MQ=37)
                                                                                                                                    cgcATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTAAcgc                >  1:924210/1‑150 (MQ=35)
                                                                                                                                            aCATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTAACTCGTCTTATc        >  3:253997/1‑150 (MQ=25)
                                                                                                                                             ggcgtaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTACCGCGTCTTATCa       >  1:846937/6‑150 (MQ=9)
                                                                                                                                              aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAg                                                                <  1:557574/93‑1 (MQ=37)
                                                                                                                                              aTCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATGTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATAAGACGC‑GTTAAGCGTCGCATCAg      <  2:1055513/150‑1 (MQ=11)
                                                                                                                                               tCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGAt                                                                   <  3:23609/89‑1 (MQ=37)
                                                                                                                                                cAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGcc                                                     >  2:342265/1‑102 (MQ=33)
                                                                                                                                                 accGCCTTATGCGACGCTTGCCGCGTCTTATCAGGCCTAAGCCAGACAGCGCACTAGCCTGCTTTAGAGTGATTTTGTAGGTGGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATAAGACGCGTTAA‑GCGTCGCATCAGGcg   <  1:972112/148‑2 (MQ=11)
                                                                                                                                                 aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGc                                                                                                                      <  2:447009/36‑1 (MQ=40)
                                                                                                                                                 aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTCGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATAAGACGC‑GTTAAGCGTCGCATCAGGcg   <  1:628783/150‑2 (MQ=11)
                                                                                                                                                 aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATGAGGCGTTTATGCCGCATCCGACATCAACGCCTTATGCGGCGC‑GTCACGCAGCTTATCAgggc   >  2:611219/1‑148 (MQ=11)
                                                                                                                                                 aaCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTCTAGCTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTACCGCGTCTTATCAGGcc   >  2:778974/1‑150 (MQ=12)
                                                                                                                                                  aCGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTAACGCGTCTTATCAGGCCt  <  1:469026/150‑1 (MQ=31)
                                                                                                                                                   |                                                                                                                                                     
TCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACATCAACGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGC‑TTAACGCGTCTTATCAGGCCT  >  NC_000913/4295913‑4296208

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑