| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2775087 = | 59 (2.000) | 4 (0.150) | 4/238 | 2.8 | 7.1% | intergenic (+66/‑458) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913 | 2775134 = | 50 (1.850) | intergenic (+113/‑411) | yfjW/ypjI | CP4‑57 prophage; putative inner membrane protein/pseudogene, CP4‑57 putative prophage remnant;Phage or Prophage Related | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775237‑2775087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgctttaaaGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGC > NC_000913/2775134‑2775275 GCGCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTT > 7:2364/1‑148 CGCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAA < 5:42372/149‑1 GCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACTCTCAAGCGTGATTTAA > 7:68219/1‑148 GCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAA < 2:102174/149‑1 AGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGC < 6:57198/77‑1 GCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGA < 7:14367/137‑1 GCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGA > 8:14367/1‑137 TTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAG < 1:90122/121‑1 TTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAG > 2:90122/1‑121 CCTGCTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAAT < 8:48737/148‑1 CTGCTTTAAAGTGGCGTTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATG > 8:39325/1‑149 CTTTAAAGTGGCG‑TTTTTGTCGTTACCCATACGTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTG < 2:31403/148‑1 TAAAGTGGCGTTTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGC < 7:39325/147‑1 AAAGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTG < 6:16451/68‑1 GCGCTTCCATGCCGCTGGCTCGGCATATTTCTGGCTTTTCAACCGCTCAGTTCTGGCAGTTAAACAACAGAAAATATAGGTATGGGTAACGACAAAAACGCCACTTTAAAGCAGGTATGAGTGTCCGCTTCACGCTCAAGCCTGCTTTAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2775237‑2775087‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctgctttaaaGTGGCG‑TTTTTGTCGTTACCCATACCTATATTTTCTGTTGTTTAACTGCCAGAACTGAGCGGTTGAAAAGCCAGAAATATGCCGAGCCAGCGGCATGGAAGCGCCAGCAGCTGTTGAATGGAGTACTGTAGGCAAATGGTGC > NC_000913/2775134‑2775275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |