Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 4,620,780 IS1 (–) +9 bp coding (1178‑1186/1224 nt) deoB → phosphopentomutase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3583428 =NA (NA)69 (1.760) 57/260 0.0 100% noncoding (1/768 nt) IS1 repeat region
?NC_000913 4620780 = 0 (0.000)coding (1178/1224 nt) deoB phosphopentomutase
* ? NC_000913 = 3584195NA (NA)45 (1.160) 41/258 0.1 100% noncoding (768/768 nt) IS1 repeat region
?NC_000913 = 4620788 0 (0.000)coding (1186/1224 nt) deoB phosphopentomutase

GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3584047‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGTGGT  <  NC_000913/4620788‑4620642
                                                                                                                                                                                                                                                                                                        
GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAACTCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACAGAAAACACTATCAATAAGTTGGAGTCATTACC                                                                                                                                                     >  7:151774/1‑149
   TTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCgg                                                                                                                                                  <  3:151814/149‑3
          GCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTT                                                                                                                                           >  4:55668/1‑149
           CATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTT                                                                                                                                          >  2:129577/1‑149
               ACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCA                                                                                                                                      <  8:29246/149‑1
               ACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGC                                                                                                                                        >  7:29246/1‑147
                 CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCA                                                                                                                                      >  6:144338/1‑147
                 CTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGC                                                                                                                                        >  4:116897/1‑145
                          AGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGC                                                                                                                             <  5:144338/147‑1
                                   CTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGC                                                                                                                   >  7:58829/1‑148
                                               GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGA                                                                                                      <  1:129577/149‑1
                                               GGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCAC                                                                                                        >  8:140943/1‑147
                                                GACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGAT                                                                                                     >  7:90522/1‑149
                                                     AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCC                                                                                                <  8:90522/149‑1
                                                     AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGA                                                                                                      >  5:28560/1‑143
                                                     AAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGA                                                                                                      <  6:28560/143‑1
                                                            TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGC                                                                                         >  8:146879/1‑149
                                                                GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGG                                                                                     <  3:116897/149‑1
                                                                   CTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTT                                                                                   <  8:58829/148‑1
                                                                      AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTAC                                                                               >  3:49780/1‑149
                                                                      AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTAC                                                                               <  7:146879/149‑1
                                                                      AAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGA                                                                                                      >  4:123839/1‑126
                                                                        AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTT                                                                             >  3:114857/1‑149
                                                                            GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCG                                                                          <  4:114857/148‑1
                                                                              TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCC                                                                                                                            >  8:70151/1‑96
                                                                              TGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCC                                                                                                                            <  7:70151/96‑1
                                                                                     GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATAC                                                                >  2:188722/1‑149
                                                                                      CATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATAC                                                                <  1:188722/148‑1
                                                                                                  ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATG                                                   >  8:87443/1‑149
                                                                                                   TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGT                                                  <  3:55668/149‑1
                                                                                                              CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGC                                          <  7:29934/146‑1
                                                                                                              CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGC                                          >  8:29934/1‑146
                                                                                                                 AACATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGT                                        <  7:87443/145‑1
                                                                                                                    ATAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGT                                   >  4:166280/1‑147
                                                                                                                     TAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGG                                                                        >  4:36335/1‑109
                                                                                                                     TAAAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGG                                                                        <  3:36335/109‑1
                                                                                                                       AAACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTA                              <  4:49780/149‑1
                                                                                                                         ACACTATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGT                                                                                             >  2:195881/1‑84
                                                                                                                             TATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAG                                                                                                               <  7:132712/62‑1
                                                                                                                             TATCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAG                                                                                                               >  8:132712/1‑62
                                                                                                                               TCAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCA                      <  7:140943/149‑1
                                                                                                                                CAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGT                                   <  4:130626/135‑1
                                                                                                                                CAATAAGTTGGAGTCATTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGT                                   >  3:130626/1‑135
                                                                                                                                                TTACCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGT     >  5:149222/1‑149
                                                                                                                                                   CCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAG                                >  8:1145/1‑119
                                                                                                                                                   CCCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAG                                <  7:1145/119‑1
                                                                                                                                                    CCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGTGGT  >  6:164163/1‑148
                                                                                                                                                    CCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGT     >  2:127779/1‑145
                                                                                                                                                    CCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGT     <  1:127779/145‑1
                                                                                                                                                                                                                                                                                                        
GAATTGAGCGGCATAACCTGAATCTGAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3584047‑3584195
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cCAAAATATTTTGCCAGAGTCTGGCCGATATCCGCGAAGGTTTCACGATGACCCAGTGAGCCCGGTTTTACTTTCGGGCCATATACCAGTACCGGAATGTGTTCACGCGTGTGGTCAGTACCGGTCCAGGTCGGATCGCAACCGTGGT  <  NC_000913/4620788‑4620642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.